{ "type": "genome", "identifier": "GCF_031190635.1", "organism": "Neisseria subflava", "title": "Neisseria subflava", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zymo Research Corporation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_031190635.1", "bioproject": "PRJNA224116", "biosample": "SAMN37162767", "wgs_master": "na", "refseq_category": "na", "taxid": "28449", "species_taxid": "28449", "organism_name": "Neisseria subflava", "infraspecific_name": "strain=LMG 5313", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/09/04", "asm_name": "ASM3119063v1", "asm_submitter": "Zymo Research Corporation", "gbrs_paired_asm": "GCA_031190635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/031/190/635/GCF_031190635.1_ASM3119063v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2195884", "genome_size_ungapped": "2195884", "gc_percent": "49.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_031190635.1-RS_2024_09_06", "annotation_date": "2024-09-06", "total_gene_count": "2111", "protein_coding_gene_count": "1978", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-09-04", "dateModified": "2023-09-04", "datePublished": "2023-09-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Neisseria subflava" ], "sample_taxid": [ "28449" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.613 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2195884", "Number of Sequences": "1", "Longest Sequences (bp)": "2195884", "N50 (bp)": "2195884", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.5", "Number of CDSs": "2038", "Average Protein Length": "305.9", "Coding Ratio (%)": "85.2", "Number of rRNAs": "12", "Number of tRNAs": "56", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Neisseria subflava", "strain": "strain=ATCC 49275", "accession": "GCA_005221305.1", "taxid": 28449, "species_taxid": 28449, "relation_to_type": "type", "validated": true, "ani": 99.9969, "matched_fragments": 730, "total_fragments": 731, "ani_threshold": 95, "status": "conclusive" }, { 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.29", "min_intra_species_ani": "96.65", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.93", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_003044645.1", "gtdb_species": "s__Neisseria subflava_B", "ani": 94.6222, "matched_fragments": 634, "total_fragments": 731, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria", "ani_circumscription_radius": 95.654, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001618085.1", "gtdb_species": "s__Neisseria flavescens_C", "ani": 94.5892, "matched_fragments": 619, "total_fragments": 731, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria", "ani_circumscription_radius": 95.4709, 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"96.07", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 22, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.086, "cell_length": -0.056, "doubling_h": -0.218, "growth_tmp": 33.0, "optimum_tmp": 36.0, "optimum_ph": 7.0, "genome_size": 2307428.0, "gc_content": 49.0, "coding_genes": 2098.0, "rRNA16S_genes": 4.014, "tRNA_genes": 59.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Neisseria", "subflava" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }