{
    "type": "genome",
    "identifier": "GCF_031192325.1",
    "organism": "Streptococcus salivarius",
    "title": "Streptococcus salivarius",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Zymo Research Corporation",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_031192325.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN37162776",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "1304",
        "species_taxid": "1304",
        "organism_name": "Streptococcus salivarius",
        "infraspecific_name": "strain=LMG 11489",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/09/04",
        "asm_name": "ASM3119232v1",
        "asm_submitter": "Zymo Research Corporation",
        "gbrs_paired_asm": "GCA_031192325.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/031/192/325/GCF_031192325.1_ASM3119232v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2195702",
        "genome_size_ungapped": "2195702",
        "gc_percent": "40.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_031192325.1-RS_2024_09_06",
        "annotation_date": "2024-09-06",
        "total_gene_count": "2072",
        "protein_coding_gene_count": "1949",
        "non_coding_gene_count": "86",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-09-04",
    "dateModified": "2023-09-04",
    "datePublished": "2023-09-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptococcus salivarius"
        ],
        "sample_taxid": [
            "1304"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.618 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2195702",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2195702",
        "N50 (bp)": "2195702",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "40.1",
        "Number of CDSs": "1994",
        "Average Protein Length": "320.0",
        "Coding Ratio (%)": "87.2",
        "Number of rRNAs": "15",
        "Number of tRNAs": "67",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Streptococcus salivarius",
                "strain": "strain=NCTC8618",
                "accession": "GCA_900636435.1",
                "taxid": 1304,
                "species_taxid": 1304,
                "relation_to_type": "suspected-type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
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                "accession": "GCA_000785515.1",
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                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.986,
                "matched_fragments": 725,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptococcus salivarius",
                "strain": "strain=JCM 5707",
                "accession": "GCA_019972895.1",
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                "species_taxid": 1304,
                "relation_to_type": "suspected-type",
                "validated": true,
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                "matched_fragments": 706,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptococcus salivarius",
                "strain": "strain=ATCC 7073",
                "accession": "GCA_900143035.1",
                "taxid": 1304,
                "species_taxid": 1304,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9623,
                "matched_fragments": 713,
                "total_fragments": 731,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptococcus vestibularis",
                "strain": "strain=ATCC 49124",
                "accession": "GCA_000188295.1",
                "taxid": 1343,
                "species_taxid": 1343,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.9934,
                "matched_fragments": 531,
                "total_fragments": 731,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus thermophilus",
                "strain": "strain=DSM 20617",
                "accession": "GCA_019972875.1",
                "taxid": 1308,
                "species_taxid": 1308,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.1585,
                "matched_fragments": 480,
                "total_fragments": 731,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus ruminantium",
                "strain": "strain=GUT187T",
                "accession": "GCA_003609975.1",
                "taxid": 1917441,
                "species_taxid": 1917441,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9358,
                "matched_fragments": 71,
                "total_fragments": 731,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus parasuis",
                "strain": "strain=SUT-286",
                "accession": "GCA_021654455.1",
                "taxid": 1501662,
                "species_taxid": 1501662,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.8422,
                "matched_fragments": 105,
                "total_fragments": 731,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus saliviloxodontae",
                "strain": "strain=DSM 27513",
                "accession": "GCA_016908655.1",
                "taxid": 1349416,
                "species_taxid": 1349416,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7635,
                "matched_fragments": 184,
                "total_fragments": 731,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus equi subsp. ruminatorum",
                "strain": "strain=CECT 5772",
                "accession": "GCA_000706805.1",
                "taxid": 254358,
                "species_taxid": 1336,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6899,
                "matched_fragments": 73,
                "total_fragments": 731,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000785515.1",
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                "matched_fragments": 727,
                "total_fragments": 731,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.08",
                "min_intra_species_ani": "95.32",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 131,
                "status": "conclusive"
            },
            {
                "accession": "GCF_009738225.1",
                "gtdb_species": "s__Streptococcus sp001556435",
                "ani": 94.9049,
                "matched_fragments": 659,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
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                "mean_intra_species_ani": "96.11",
                "min_intra_species_ani": "95.45",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 79,
                "status": "-"
            },
            {
                "accession": "GCA_003521145.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000188295.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
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                "mean_intra_species_ani": "98.03",
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                "num_clustered_genomes": 14,
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            },
            {
                "accession": "GCF_010604095.1",
                "gtdb_species": "s__Streptococcus sp000187445",
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                "num_clustered_genomes": 19,
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            },
            {
                "accession": "GCF_010120595.1",
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                "mean_intra_species_ani": "98.46",
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                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 130,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "bacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "salivarius"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}