{
    "type": "genome",
    "identifier": "GCF_031316575.1",
    "organism": "Bacillus pumilus",
    "title": "Bacillus pumilus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "American Type Culture Collection (ATCC)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_031316575.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12236526",
        "wgs_master": "VKPY00000000.1",
        "refseq_category": "na",
        "taxid": "1408",
        "species_taxid": "1408",
        "organism_name": "Bacillus pumilus",
        "infraspecific_name": "strain=ATCC 7061",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/09/08",
        "asm_name": "ASM3131657v1",
        "asm_submitter": "American Type Culture Collection (ATCC)",
        "gbrs_paired_asm": "GCA_031316575.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/031/316/575/GCF_031316575.1_ASM3131657v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3902967",
        "genome_size_ungapped": "3902967",
        "gc_percent": "41.500000",
        "replicon_count": "0",
        "scaffold_count": "82",
        "contig_count": "82",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_031316575.1-RS_2024_09_28",
        "annotation_date": "2024-09-28",
        "total_gene_count": "4133",
        "protein_coding_gene_count": "3979",
        "non_coding_gene_count": "70",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-09-08",
    "dateModified": "2023-09-08",
    "datePublished": "2023-09-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bacillus pumilus"
        ],
        "sample_taxid": [
            "1408"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.110 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3902967",
        "Number of Sequences": "82",
        "Longest Sequences (bp)": "1155557",
        "N50 (bp)": "800881",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.7",
        "Number of CDSs": "4021",
        "Average Protein Length": "284.5",
        "Coding Ratio (%)": "87.9",
        "Number of rRNAs": "1",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Bacillus pumilus",
                "strain": "strain=NCTC10337",
                "accession": "GCA_900186955.1",
                "taxid": 1408,
                "species_taxid": 1408,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9932,
                "matched_fragments": 1262,
                "total_fragments": 1284,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bacillus pumilus",
                "strain": "strain=ATCC 7061",
                "accession": "GCA_000172815.1",
                "taxid": 1408,
                "species_taxid": 1408,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9846,
                "matched_fragments": 1256,
                "total_fragments": 1284,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bacillus safensis",
                "strain": "strain=FO-36b",
                "accession": "GCA_003097715.1",
                "taxid": 561879,
                "species_taxid": 561879,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.5573,
                "matched_fragments": 1132,
                "total_fragments": 1284,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus safensis",
                "strain": "strain=FO-36b",
                "accession": "GCA_000691165.1",
                "taxid": 561879,
                "species_taxid": 561879,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.5158,
                "matched_fragments": 1121,
                "total_fragments": 1284,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus safensis subsp. osmophilus",
                "strain": "strain=BC09",
                "accession": "GCA_003254445.1",
                "taxid": 1982610,
                "species_taxid": 561879,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.4354,
                "matched_fragments": 1103,
                "total_fragments": 1284,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus australimaris",
                "strain": "strain=NH7I_1",
                "accession": "GCA_001307105.1",
                "taxid": 1326968,
                "species_taxid": 1326968,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.2434,
                "matched_fragments": 1115,
                "total_fragments": 1284,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus zhangzhouensis",
                "strain": "strain=DW5-4",
                "accession": "GCA_000715205.1",
                "taxid": 1178540,
                "species_taxid": 1178540,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.7846,
                "matched_fragments": 1110,
                "total_fragments": 1284,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Peribacillus frigoritolerans",
                "strain": "strain=FJAT-2396",
                "accession": "GCA_001636405.1",
                "taxid": 450367,
                "species_taxid": 450367,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7737,
                "matched_fragments": 56,
                "total_fragments": 1284,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus kokaensis",
                "strain": "strain=LOB 377",
                "accession": "GCA_014656545.1",
                "taxid": 2759023,
                "species_taxid": 2759023,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3197,
                "matched_fragments": 54,
                "total_fragments": 1284,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900186955.1",
                "gtdb_species": "s__Bacillus pumilus",
                "ani": 99.9932,
                "matched_fragments": 1262,
                "total_fragments": 1284,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.74",
                "min_intra_species_ani": "95.13",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 168,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003431975.1",
                "gtdb_species": "s__Bacillus pumilus_N",
                "ani": 92.9812,
                "matched_fragments": 1140,
                "total_fragments": 1284,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.39",
                "min_intra_species_ani": "99.09",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000691165.1",
                "gtdb_species": "s__Bacillus safensis",
                "ani": 91.5289,
                "matched_fragments": 1120,
                "total_fragments": 1284,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.22",
                "min_intra_species_ani": "95.80",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 99,
                "status": "-"
            },
            {
                "accession": "GCF_001307105.1",
                "gtdb_species": "s__Bacillus australimaris",
                "ani": 91.2434,
                "matched_fragments": 1115,
                "total_fragments": 1284,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000715205.1",
                "gtdb_species": "s__Bacillus zhangzhouensis",
                "ani": 90.7846,
                "matched_fragments": 1110,
                "total_fragments": 1284,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.04",
                "min_intra_species_ani": "95.33",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_014764715.1",
                "gtdb_species": "s__Bacillus sp014764715",
                "ani": 90.6236,
                "matched_fragments": 1106,
                "total_fragments": 1284,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002744245.1",
                "gtdb_species": "s__Bacillus pumilus_M",
                "ani": 89.3046,
                "matched_fragments": 1041,
                "total_fragments": 1284,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000300535.1",
                "gtdb_species": "s__Bacillus xiamenensis",
                "ani": 88.9962,
                "matched_fragments": 1014,
                "total_fragments": 1284,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.27",
                "min_intra_species_ani": "99.24",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_014656545.1",
                "gtdb_species": "s__Neobacillus sp014656545",
                "ani": 77.3197,
                "matched_fragments": 54,
                "total_fragments": 1284,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.176,
        "cell_length": 0.387,
        "doubling_h": -0.134,
        "growth_tmp": 33.5,
        "optimum_tmp": 33.5,
        "optimum_ph": 7.746,
        "genome_size": 3752389.295,
        "gc_content": 40.899,
        "coding_genes": 3738.818,
        "rRNA16S_genes": 7.2,
        "tRNA_genes": 80.0,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Bacillus",
        "pumilus"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}