{ "type": "genome", "identifier": "GCF_031348265.1", "organism": "Streptomyces collinus", "title": "Streptomyces collinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "South China Sea Institute of Oceanology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_031348265.1", "bioproject": "PRJNA224116", "biosample": "SAMN37218762", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "42684", "species_taxid": "42684", "organism_name": "Streptomyces collinus", "infraspecific_name": "strain=CGMCC 4.1623", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/09/12", "asm_name": "ASM3134826v1", "asm_submitter": "South China Sea Institute of Oceanology", "gbrs_paired_asm": "GCA_031348265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/031/348/265/GCF_031348265.1_ASM3134826v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8867154", "genome_size_ungapped": "8867154", "gc_percent": "71.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_031348265.1-RS_2024_09_11", "annotation_date": "2024-09-11", "total_gene_count": "8012", "protein_coding_gene_count": "7738", "non_coding_gene_count": "88", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-09-12", "dateModified": "2023-09-12", "datePublished": "2023-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces collinus" ], "sample_taxid": [ "42684" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": 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{ "organism_name": "Streptomyces massasporeus", "strain": "strain=JCM 4139", "accession": "GCA_014648995.1", "taxid": 67324, "species_taxid": 67324, "relation_to_type": "type", "validated": true, "ani": 93.1546, "matched_fragments": 2400, "total_fragments": 2955, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces flavovariabilis", "strain": "strain=NRRL B-16367", "accession": "GCA_000725785.1", "taxid": 284031, "species_taxid": 284031, "relation_to_type": "type", "validated": true, "ani": 93.0666, "matched_fragments": 2344, "total_fragments": 2955, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces luteogriseus", "strain": "strain=DSM 40483", "accession": "GCA_014205055.1", "taxid": 68233, "species_taxid": 68233, "relation_to_type": "type", "validated": true, "ani": 92.9245, "matched_fragments": 2381, "total_fragments": 2955, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces tuirus", 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