{ "type": "genome", "identifier": "GCF_031451635.1", "organism": "Halomonas eurihalina", "title": "Halomonas eurihalina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Sevilla, Spain", "publication": [ {} ], "properties": { "assembly_accession": "GCF_031451635.1", "bioproject": "PRJNA224116", "biosample": "SAMN34164602", "wgs_master": "JARWAH000000000.1", "refseq_category": "reference genome", "taxid": "42566", "species_taxid": "42566", "organism_name": "Halomonas eurihalina", "infraspecific_name": "strain=DSM 5720", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/09/13", "asm_name": "ASM3145163v1", "asm_submitter": "University of Sevilla, Spain", "gbrs_paired_asm": "GCA_031451635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/031/451/635/GCF_031451635.1_ASM3145163v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3842566", "genome_size_ungapped": "3842566", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "26", "contig_count": "26", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_031451635.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3646", "protein_coding_gene_count": "3538", "non_coding_gene_count": "74", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-09-13", "dateModified": "2023-09-13", "datePublished": "2023-09-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Halomonas eurihalina" ], "sample_taxid": [ "42566" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "1.071 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3842566", "Number of Sequences": "26", "Longest Sequences (bp)": "1078770", "N50 (bp)": "506174", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.0", "Number of CDSs": "3579", "Average Protein Length": "319.8", "Coding Ratio (%)": "89.4", "Number of rRNAs": "1", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas elongata", "strain": "strain=type strain: DSM 2581", "accession": "GCA_000196875.2", "taxid": 2746, "species_taxid": 2746, "relation_to_type": "type", "validated": true, "ani": 93.2445, "matched_fragments": 1100, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas caseinilytica", "strain": "strain=CGMCC 1.6773", "accession": "GCA_900109905.1", "taxid": 438744, "species_taxid": 438744, "relation_to_type": "type", "validated": true, "ani": 88.5883, "matched_fragments": 1009, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas caseinilytica", "strain": "strain=JCM 14802", "accession": "GCA_001662305.1", "taxid": 438744, "species_taxid": 438744, "relation_to_type": "type", "validated": true, "ani": 88.5556, "matched_fragments": 998, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas stenophila", "strain": "strain=CECT 7744", "accession": "GCA_014192275.1", "taxid": 795312, "species_taxid": 795312, "relation_to_type": "type", "validated": true, "ani": 83.0158, "matched_fragments": 800, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas halophila", "strain": "strain=NBRC 102604", "accession": "GCA_007989465.1", "taxid": 29573, "species_taxid": 29573, "relation_to_type": "type", "validated": true, "ani": 82.8764, "matched_fragments": 761, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas nitroreducens", "strain": "strain=11S", "accession": "GCA_003966155.1", "taxid": 447425, "species_taxid": 447425, "relation_to_type": "type", "validated": true, "ani": 82.7408, "matched_fragments": 759, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas organivorans", "strain": "strain=CECT 5995", "accession": "GCA_014192055.1", "taxid": 257772, "species_taxid": 257772, "relation_to_type": "type", "validated": true, "ani": 82.733, "matched_fragments": 829, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas smyrnensis", "strain": "strain=AAD6", "accession": "GCA_000265245.2", "taxid": 720605, "species_taxid": 720605, "relation_to_type": "type", "validated": true, "ani": 82.6832, "matched_fragments": 742, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas saccharevitans", "strain": "strain=CGMCC 1.6493", "accession": "GCA_900116405.1", "taxid": 416872, "species_taxid": 416872, "relation_to_type": "type", "validated": true, "ani": 81.55, "matched_fragments": 645, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas urmiana", "strain": "strain=TBZ3", "accession": "GCA_005780185.1", "taxid": 490901, "species_taxid": 490901, "relation_to_type": "type", "validated": true, "ani": 81.482, "matched_fragments": 694, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campisalis", "strain": "strain=A4", "accession": "GCA_022341425.1", "taxid": 74661, "species_taxid": 74661, "relation_to_type": "type", "validated": true, "ani": 80.9494, "matched_fragments": 608, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lysinitropha", "strain": "strain=3(2)", "accession": "GCA_902500215.1", "taxid": 2607506, "species_taxid": 2607506, "relation_to_type": "type", "validated": true, "ani": 80.7442, "matched_fragments": 611, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 80.6488, "matched_fragments": 630, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas alkalisoli", "strain": "strain=M5N1S17", "accession": "GCA_021412585.1", "taxid": 2907158, "species_taxid": 2907158, "relation_to_type": "type", 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"num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000196875.2", "gtdb_species": "s__Halomonas elongata", "ani": 93.2445, "matched_fragments": 1100, "total_fragments": 1267, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.75", "min_intra_species_ani": "98.56", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001662305.1", "gtdb_species": "s__Halomonas caseinilytica", "ani": 88.5349, "matched_fragments": 1000, "total_fragments": 1267, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.18", "min_intra_species_ani": "98.28", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 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81.5378, "matched_fragments": 647, "total_fragments": 1267, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005780185.1", "gtdb_species": "s__Halomonas urmiana", "ani": 81.4588, "matched_fragments": 697, "total_fragments": 1267, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.121, "cell_length": 0.276, "doubling_h": 0.239, "growth_tmp": 31.0, "optimum_tmp": 31.375, "optimum_ph": 7.642, "genome_size": 3925920.429, "gc_content": 60.3, "coding_genes": 3582.761, "rRNA16S_genes": 3.8, "tRNA_genes": 63.428, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.808, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.961, "coccus_cell_shape": 0.019, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.019, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Halomonas", "eurihalina" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }