{ "type": "genome", "identifier": "GCF_031451685.1", "organism": "Halomonas mongoliensis", "title": "Halomonas mongoliensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Sevilla, Spain", "publication": [ {} ], "properties": { "assembly_accession": "GCF_031451685.1", "bioproject": "PRJNA224116", "biosample": "SAMN34164681", "wgs_master": "JARWAL000000000.1", "refseq_category": "reference genome", "taxid": "321265", "species_taxid": "321265", "organism_name": "Halomonas mongoliensis", "infraspecific_name": "strain=DSM 17332", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/09/13", "asm_name": "ASM3145168v1", "asm_submitter": "University of Sevilla, Spain", "gbrs_paired_asm": "GCA_031451685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/031/451/685/GCF_031451685.1_ASM3145168v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3549079", "genome_size_ungapped": "3549079", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "57", "contig_count": "57", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_031451685.1-RS_2024_09_15", "annotation_date": "2024-09-15", "total_gene_count": "3370", "protein_coding_gene_count": "3274", "non_coding_gene_count": "72", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-09-13", "dateModified": "2023-09-13", "datePublished": "2023-09-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Halomonas mongoliensis" ], "sample_taxid": [ "321265" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "0.966 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3549079", "Number of Sequences": "57", "Longest Sequences (bp)": "657058", "N50 (bp)": "211607", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.7", "Number of CDSs": "3268", "Average Protein Length": "323.8", "Coding Ratio (%)": "89.5", "Number of rRNAs": "2", "Number of tRNAs": "66", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas campaniensis", "strain": "strain=5AG", "accession": "GCA_014193375.1", "taxid": 213554, "species_taxid": 213554, "relation_to_type": "type", "validated": true, "ani": 88.21, "matched_fragments": 887, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas shengliensis", "strain": "strain=CGMCC 1.6444", "accession": "GCA_900104135.1", "taxid": 419597, "species_taxid": 419597, "relation_to_type": "type", "validated": true, "ani": 86.6665, "matched_fragments": 824, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas alimentaria", "strain": "strain=DSM 15356", "accession": "GCA_009902005.1", "taxid": 147248, "species_taxid": 147248, "relation_to_type": "type", "validated": true, "ani": 85.9069, "matched_fragments": 784, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas denitrificans", "strain": "strain=DSM 18045", "accession": "GCA_003056305.1", "taxid": 370769, "species_taxid": 370769, "relation_to_type": "type", "validated": true, "ani": 85.0546, "matched_fragments": 779, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas heilongjiangensis", "strain": "strain=9-2", "accession": "GCA_003202165.1", "taxid": 1387883, "species_taxid": 1387883, "relation_to_type": "type", "validated": true, "ani": 84.8623, "matched_fragments": 821, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas heilongjiangensis", "strain": "strain=DSM 26881", "accession": "GCA_002879645.1", "taxid": 1387883, "species_taxid": 1387883, "relation_to_type": "type", "validated": true, "ani": 84.8239, "matched_fragments": 807, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campisalis", "strain": "strain=A4", "accession": "GCA_022341425.1", "taxid": 74661, "species_taxid": 74661, "relation_to_type": "type", "validated": true, "ani": 84.8103, "matched_fragments": 832, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lactosivorans", "strain": "strain=KCTC 52281", "accession": "GCA_003254665.1", "taxid": 2185141, "species_taxid": 2185141, "relation_to_type": "type", "validated": true, "ani": 83.5205, "matched_fragments": 760, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas icarae", "strain": "strain=D1-1", "accession": "GCA_009901955.1", "taxid": 2691040, "species_taxid": 2691040, "relation_to_type": "type", "validated": true, "ani": 83.3233, "matched_fragments": 732, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas halodenitrificans", "strain": "strain=DSM 735", "accession": "GCA_000620045.1", "taxid": 28252, "species_taxid": 28252, "relation_to_type": "type", "validated": true, "ani": 83.2525, "matched_fragments": 726, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 83.1369, "matched_fragments": 749, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lysinitropha", "strain": "strain=3(2)", "accession": "GCA_902500215.1", "taxid": 2607506, "species_taxid": 2607506, "relation_to_type": "type", "validated": true, "ani": 83.0451, "matched_fragments": 727, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas cerina", "strain": "strain=CECT 7282", "accession": "GCA_014192215.1", "taxid": 447424, "species_taxid": 447424, "relation_to_type": "type", "validated": true, "ani": 82.935, "matched_fragments": 737, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ethanolica", "strain": "strain=MCCC 1A11081", "accession": "GCA_021404305.1", "taxid": 2733486, 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"type", "validated": true, "ani": 82.2465, "matched_fragments": 720, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas taeanensis", "strain": "strain=BH539", "accession": "GCA_900100755.1", "taxid": 284577, "species_taxid": 284577, "relation_to_type": "type", "validated": true, "ani": 80.2796, "matched_fragments": 532, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas citronellolis", "strain": "strain=NBRC 103043", "accession": "GCA_002091555.1", "taxid": 53408, "species_taxid": 53408, "relation_to_type": "type", "validated": true, "ani": 78.0335, "matched_fragments": 419, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sichuanensis", "strain": "strain=WCHPs060039", "accession": "GCA_003231305.1", "taxid": 2213015, "species_taxid": 2213015, "relation_to_type": "type", "validated": true, "ani": 77.4723, 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85.7178, "matched_fragments": 738, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002879645.1", "gtdb_species": "s__Halomonas heilongjiangensis", "ani": 84.8313, "matched_fragments": 806, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003202205.1", "gtdb_species": "s__Halomonas sp003202205", "ani": 84.7906, "matched_fragments": 793, 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