{
    "type": "genome",
    "identifier": "GCF_031451755.1",
    "organism": "Vreelandella vilamensis",
    "title": "Vreelandella vilamensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Sevilla, Spain",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_031451755.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN34164767",
        "wgs_master": "JARWAN000000000.1",
        "refseq_category": "reference genome",
        "taxid": "531309",
        "species_taxid": "531309",
        "organism_name": "Vreelandella vilamensis",
        "infraspecific_name": "strain=DSM 21020",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/09/13",
        "asm_name": "ASM3145175v1",
        "asm_submitter": "University of Sevilla, Spain",
        "gbrs_paired_asm": "GCA_031451755.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/031/451/755/GCF_031451755.1_ASM3145175v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3472275",
        "genome_size_ungapped": "3472275",
        "gc_percent": "55.000000",
        "replicon_count": "0",
        "scaffold_count": "77",
        "contig_count": "77",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_031451755.1-RS_2024_04_07",
        "annotation_date": "2024-04-07",
        "total_gene_count": "3242",
        "protein_coding_gene_count": "3123",
        "non_coding_gene_count": "68",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-09-13",
    "dateModified": "2023-09-13",
    "datePublished": "2023-09-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Vreelandella vilamensis"
        ],
        "sample_taxid": [
            "531309"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany"
        ],
        "sample_host_location_id": [],
        "data_size": "0.993 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3472275",
        "Number of Sequences": "77",
        "Longest Sequences (bp)": "268025",
        "N50 (bp)": "107358",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "55.2",
        "Number of CDSs": "3161",
        "Average Protein Length": "322.1",
        "Coding Ratio (%)": "88.0",
        "Number of rRNAs": "1",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Halomonas salicampi",
                "strain": "strain=BH103",
                "accession": "GCA_013415105.1",
                "taxid": 1449798,
                "species_taxid": 1449798,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.5478,
                "matched_fragments": 816,
                "total_fragments": 1123,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas massiliensis",
                "strain": "strain=Marseille-P2426",
                "accession": "GCA_900155385.1",
                "taxid": 1816686,
                "species_taxid": 1816686,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6976,
                "matched_fragments": 733,
                "total_fragments": 1123,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas arcis",
                "strain": "strain=CGMCC 1.6494",
                "accession": "GCA_900103865.1",
                "taxid": 416873,
                "species_taxid": 416873,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1323,
                "matched_fragments": 350,
                "total_fragments": 1123,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas meridiana",
                "strain": "strain=NBRC 15608",
                "accession": "GCA_006540125.1",
                "taxid": 29570,
                "species_taxid": 29570,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0407,
                "matched_fragments": 331,
                "total_fragments": 1123,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas meridiana",
                "strain": "strain=ACAM 246",
                "accession": "GCA_900129255.1",
                "taxid": 29570,
                "species_taxid": 29570,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9935,
                "matched_fragments": 348,
                "total_fragments": 1123,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas aquamarina",
                "strain": "strain=558",
                "accession": "GCA_900110265.1",
                "taxid": 77097,
                "species_taxid": 77097,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8957,
                "matched_fragments": 328,
                "total_fragments": 1123,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas piezotolerans",
                "strain": "strain=NBT06E8",
                "accession": "GCA_012427705.1",
                "taxid": 2609667,
                "species_taxid": 2609667,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.876,
                "matched_fragments": 308,
                "total_fragments": 1123,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas piezotolerans",
                "strain": "strain=NBT06E8",
                "accession": "GCA_009660035.1",
                "taxid": 2609667,
                "species_taxid": 2609667,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8379,
                "matched_fragments": 301,
                "total_fragments": 1123,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas lionensis",
                "strain": "strain=RHS90",
                "accession": "GCA_002087295.1",
                "taxid": 1144478,
                "species_taxid": 1144478,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7739,
                "matched_fragments": 307,
                "total_fragments": 1123,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas profundi",
                "strain": "strain=MT13",
                "accession": "GCA_019722725.1",
                "taxid": 2852117,
                "species_taxid": 2852117,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5126,
                "matched_fragments": 272,
                "total_fragments": 1123,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas profundi",
                "strain": "strain=MT13",
                "accession": "GCA_019504685.1",
                "taxid": 2852117,
                "species_taxid": 2852117,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5046,
                "matched_fragments": 268,
                "total_fragments": 1123,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas azerica",
                "strain": "strain=TBZ9",
                "accession": "GCA_013112225.1",
                "taxid": 2732867,
                "species_taxid": 2732867,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5007,
                "matched_fragments": 326,
                "total_fragments": 1123,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas zhaodongensis",
                "strain": "strain=NEAU-ST10-25",
                "accession": "GCA_013415115.1",
                "taxid": 1176240,
                "species_taxid": 1176240,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4866,
                "matched_fragments": 253,
                "total_fragments": 1123,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas subglaciescola",
                "strain": "strain=ACAM 12",
                "accession": "GCA_900142895.1",
                "taxid": 29571,
                "species_taxid": 29571,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4757,
                "matched_fragments": 305,
                "total_fragments": 1123,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas zhanjiangensis",
                "strain": "strain=DSM 21076",
                "accession": "GCA_000377665.1",
                "taxid": 1121960,
                "species_taxid": 1121960,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4589,
                "matched_fragments": 264,
                "total_fragments": 1123,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas nanhaiensis",
                "strain": "strain=JCM 18142",
                "accession": "GCA_003990185.1",
                "taxid": 1258546,
                "species_taxid": 1258546,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3446,
                "matched_fragments": 262,
                "total_fragments": 1123,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas campisalis",
                "strain": "strain=A4",
                "accession": "GCA_022341425.1",
                "taxid": 74661,
                "species_taxid": 74661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7058,
                "matched_fragments": 250,
                "total_fragments": 1123,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas antri",
                "strain": "strain=Y3S6",
                "accession": "GCA_019430905.1",
                "taxid": 2846777,
                "species_taxid": 2846777,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7033,
                "matched_fragments": 183,
                "total_fragments": 1123,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas kenyensis",
                "strain": "strain=DSM 17331",
                "accession": "GCA_022341445.1",
                "taxid": 321266,
                "species_taxid": 321266,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6314,
                "matched_fragments": 198,
                "total_fragments": 1123,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas cupida",
                "strain": "strain=NBRC 102219",
                "accession": "GCA_007991155.1",
                "taxid": 44933,
                "species_taxid": 44933,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4546,
                "matched_fragments": 122,
                "total_fragments": 1123,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas cupida",
                "strain": "strain=DSM 4740",
                "accession": "GCA_900142755.1",
                "taxid": 44933,
                "species_taxid": 44933,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3375,
                "matched_fragments": 127,
                "total_fragments": 1123,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_013415105.1",
                "gtdb_species": "s__Halomonas salicampi",
                "ani": 86.5478,
                "matched_fragments": 816,
                "total_fragments": 1123,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900155385.1",
                "gtdb_species": "s__Halomonas massiliensis",
                "ani": 81.71,
                "matched_fragments": 732,
                "total_fragments": 1123,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.38",
                "min_intra_species_ani": "98.38",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014263395.1",
                "gtdb_species": "s__Halomonas sp014263395",
                "ani": 79.9678,
                "matched_fragments": 344,
                "total_fragments": 1123,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900103865.1",
                "gtdb_species": "s__Halomonas arcis",
                "ani": 79.1293,
                "matched_fragments": 349,
                "total_fragments": 1123,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002966495.1",
                "gtdb_species": "s__Halomonas sp002966495",
                "ani": 79.0476,
                "matched_fragments": 292,
                "total_fragments": 1123,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_012427705.1",
                "gtdb_species": "s__Halomonas piezotolerans",
                "ani": 78.8873,
                "matched_fragments": 306,
                "total_fragments": 1123,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.35",
                "min_intra_species_ani": "98.70",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900110265.1",
                "gtdb_species": "s__Halomonas aquamarina",
                "ani": 78.8819,
                "matched_fragments": 329,
                "total_fragments": 1123,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.65",
                "min_intra_species_ani": "97.09",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 25,
                "status": "-"
            },
            {
                "accession": "GCF_001651035.1",
                "gtdb_species": "s__Halomonas sp001651035",
                "ani": 78.8495,
                "matched_fragments": 314,
                "total_fragments": 1123,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.79",
                "min_intra_species_ani": "97.57",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_009846525.1",
                "gtdb_species": "s__Halomonas sp002696125",
                "ani": 78.8152,
                "matched_fragments": 325,
                "total_fragments": 1123,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.53",
                "min_intra_species_ani": "98.53",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002087295.1",
                "gtdb_species": "s__Halomonas lionensis",
                "ani": 78.7739,
                "matched_fragments": 307,
                "total_fragments": 1123,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002257525.1",
                "gtdb_species": "s__Halomonas ventosae_B",
                "ani": 78.6753,
                "matched_fragments": 371,
                "total_fragments": 1123,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.23",
                "min_intra_species_ani": "97.92",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_001507855.1",
                "gtdb_species": "s__Halomonas sp001507855",
                "ani": 78.6092,
                "matched_fragments": 354,
                "total_fragments": 1123,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_004295565.1",
                "gtdb_species": "s__Halomonas olivaria",
                "ani": 78.5922,
                "matched_fragments": 338,
                "total_fragments": 1123,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004364445.1",
                "gtdb_species": "s__Halomonas alkaliantarctica",
                "ani": 78.5378,
                "matched_fragments": 343,
                "total_fragments": 1123,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.52",
                "min_intra_species_ani": "96.69",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001882345.1",
                "gtdb_species": "s__Halomonas sp001882345",
                "ani": 78.5156,
                "matched_fragments": 348,
                "total_fragments": 1123,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000377665.1",
                "gtdb_species": "s__Halomonas zhanjiangensis",
                "ani": 78.4651,
                "matched_fragments": 263,
                "total_fragments": 1123,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900142755.1",
                "gtdb_species": "s__Halomonas cupida",
                "ani": 77.3375,
                "matched_fragments": 127,
                "total_fragments": 1123,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Vreelandella",
        "vilamensis"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}