{ "type": "genome", "identifier": "GCF_031454135.1", "organism": "Arthrobacter russicus", "title": "Arthrobacter russicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_031454135.1", "bioproject": "PRJNA224116", "biosample": "SAMN35366372", "wgs_master": "JAVDQF000000000.1", "refseq_category": "reference genome", "taxid": "172040", "species_taxid": "172040", "organism_name": "Arthrobacter russicus", "infraspecific_name": "strain=DSM 14555", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/09/13", "asm_name": "ASM3145413v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_031454135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/031/454/135/GCF_031454135.1_ASM3145413v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3818559", "genome_size_ungapped": "3818559", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_031454135.1-RS_2024_09_15", "annotation_date": "2024-09-15", "total_gene_count": "3571", "protein_coding_gene_count": "3488", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-09-13", "dateModified": "2023-09-13", "datePublished": "2023-09-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Arthrobacter russicus" ], "sample_taxid": [ "172040" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.054 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3818559", "Number of Sequences": "1", "Longest Sequences (bp)": "3818559", "N50 (bp)": "3818559", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.4", "Number of CDSs": "3550", "Average Protein Length": "326.9", "Coding Ratio (%)": "91.2", "Number of rRNAs": "6", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Renibacterium salmoninarum", "strain": "strain=ATCC 33209", "accession": "GCA_000018885.1", "taxid": 1646, "species_taxid": 1646, "relation_to_type": "type", "validated": true, "ani": 79.0795, "matched_fragments": 345, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychromicrobium lacuslunae", "strain": "strain=IHBB 11108", "accession": "GCA_000950575.1", "taxid": 1618207, "species_taxid": 1618207, "relation_to_type": "type", "validated": true, "ani": 78.2476, "matched_fragments": 313, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychromicrobium silvestre", "strain": "strain=DSM 102047", "accession": "GCA_013408295.1", "taxid": 1645614, "species_taxid": 1645614, "relation_to_type": "type", "validated": true, "ani": 78.1733, "matched_fragments": 341, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter ulcerisalmonis", "strain": "", "accession": "GCA_900609065.1", "taxid": 2483813, "species_taxid": 2483813, "relation_to_type": "type", "validated": true, "ani": 78.0061, "matched_fragments": 197, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" 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"Arthrobacter citreus", "strain": "strain=DSM 20133", "accession": "GCA_009192745.1", "taxid": 1670, "species_taxid": 1670, "relation_to_type": "type", "validated": true, "ani": 77.8979, "matched_fragments": 200, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter ipis", "strain": "strain=IA7", "accession": "GCA_014694315.1", "taxid": 2716202, "species_taxid": 2716202, "relation_to_type": "type", "validated": true, "ani": 77.8936, "matched_fragments": 257, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter enclensis", "strain": "strain=NIO-1008", "accession": "GCA_001457025.1", "taxid": 993070, "species_taxid": 993070, "relation_to_type": "type", "validated": true, "ani": 77.8688, "matched_fragments": 252, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter celericrescens", "strain": "strain=NEAU-SA2", "accession": "GCA_003614925.1", "taxid": 2320851, "species_taxid": 2320851, "relation_to_type": "type", "validated": true, "ani": 77.8579, "matched_fragments": 286, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter enclensis", "strain": "strain=NIO-1008", "accession": "GCA_900094675.1", "taxid": 993070, "species_taxid": 993070, "relation_to_type": "type", "validated": true, "ani": 77.8251, "matched_fragments": 252, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter pascens", "strain": "strain=DSM 20545", "accession": "GCA_017052465.1", "taxid": 1677, "species_taxid": 1677, "relation_to_type": "type", "validated": true, "ani": 77.8002, "matched_fragments": 247, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter scleromae", "strain": "strain=CGMCC 1.3601", "accession": "GCA_014644515.1", "taxid": 158897, "species_taxid": 158897, "relation_to_type": "type", "validated": true, "ani": 77.7814, "matched_fragments": 247, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter siccitolerans", "strain": "strain=4J27", "accession": "GCA_001046895.1", "taxid": 861266, "species_taxid": 861266, "relation_to_type": "type", "validated": true, "ani": 77.7452, "matched_fragments": 248, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter sulfonivorans", "strain": "strain=ALL", "accession": "GCA_014712225.1", "taxid": 121292, "species_taxid": 121292, "relation_to_type": "type", "validated": true, "ani": 77.6729, "matched_fragments": 233, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_017898065.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 77.6684, "matched_fragments": 248, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter mobilis", "strain": "strain=E918", "accession": "GCA_012395835.1", "taxid": 2724944, "species_taxid": 2724944, "relation_to_type": "type", "validated": true, "ani": 77.6313, "matched_fragments": 267, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter globiformis", "strain": "strain=NBRC 12137", "accession": "GCA_000238915.2", "taxid": 1665, "species_taxid": 1665, "relation_to_type": "type", "validated": true, "ani": 77.5805, "matched_fragments": 262, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter zhaoguopingii", "strain": "strain=J391", "accession": "GCA_009828595.1", "taxid": 2681491, "species_taxid": 2681491, "relation_to_type": "type", "validated": true, "ani": 77.554, "matched_fragments": 241, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paeniglutamicibacter psychrophenolicus", "strain": "strain=DSM 15454", "accession": "GCA_017876575.1", "taxid": 257454, "species_taxid": 257454, "relation_to_type": "type", "validated": true, "ani": 77.4346, "matched_fragments": 221, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter terrae", "strain": "strain=Z1-20", "accession": "GCA_015708085.1", "taxid": 2935737, "species_taxid": 2935737, "relation_to_type": "type", "validated": true, "ani": 77.3704, "matched_fragments": 186, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paeniglutamicibacter gangotriensis", "strain": "strain=Lz1y", "accession": "GCA_000348945.1", "taxid": 254787, "species_taxid": 254787, "relation_to_type": "type", "validated": true, "ani": 77.0352, "matched_fragments": 169, "total_fragments": 1272, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_017419405.1", "gtdb_species": "s__Renibacterium sp005809195", "ani": 97.5567, "matched_fragments": 1116, "total_fragments": 1272, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Renibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.49", "min_intra_species_ani": "97.56", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.96", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCF_000018885.1", "gtdb_species": "s__Renibacterium salmoninarum", "ani": 79.1286, "matched_fragments": 345, "total_fragments": 1272, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Renibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_006715305.1", "gtdb_species": "s__Pseudarthrobacter sp006715305", "ani": 78.2807, "matched_fragments": 222, "total_fragments": 1272, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Pseudarthrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013408295.1", "gtdb_species": "s__Psychromicrobium silvestre", "ani": 78.2421, "matched_fragments": 341, "total_fragments": 1272, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Psychromicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000950575.1", "gtdb_species": "s__Psychromicrobium lacuslunae", "ani": 78.1941, "matched_fragments": 312, "total_fragments": 1272, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Psychromicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001428365.1", "gtdb_species": "s__Arthrobacter_I sp001428365", "ani": 78.1685, "matched_fragments": 330, "total_fragments": 1272, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007858535.1", "gtdb_species": "s__Arthrobacter_I sp007858535", "ani": 78.0657, "matched_fragments": 322, "total_fragments": 1272, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000482545.1", "gtdb_species": "s__Specibacter sp000482545", "ani": 78.0302, "matched_fragments": 314, "total_fragments": 1272, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Specibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018531425.1", "gtdb_species": "s__DKR-5 sp018531425", "ani": 77.9808, "matched_fragments": 305, "total_fragments": 1272, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__DKR-5", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900102895.1", "gtdb_species": "s__Arthrobacter_I sp900102895", "ani": 77.9434, "matched_fragments": 274, "total_fragments": 1272, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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"num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001750145.1", "gtdb_species": "s__Arthrobacter_I sp001750145", "ani": 77.9139, "matched_fragments": 282, "total_fragments": 1272, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002008315.2", "gtdb_species": "s__Arthrobacter sp002008315", "ani": 77.8819, "matched_fragments": 267, "total_fragments": 1272, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Arthrobacter", "russicus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }