{ "type": "genome", "identifier": "GCF_031454155.1", "organism": "Desmospora profundinema", "title": "Desmospora profundinema", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_031454155.1", "bioproject": "PRJNA224116", "biosample": "SAMN17619999", "wgs_master": "JAVDQG000000000.1", "refseq_category": "reference genome", "taxid": "1571184", "species_taxid": "1571184", "organism_name": "Desmospora profundinema", "infraspecific_name": "strain=DSM 45903", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/09/13", "asm_name": "ASM3145415v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_031454155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/031/454/155/GCF_031454155.1_ASM3145415v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3651457", "genome_size_ungapped": "3651457", "gc_percent": "52.000000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_031454155.1-RS_2024_09_15", "annotation_date": "2024-09-15", "total_gene_count": "3569", "protein_coding_gene_count": "3466", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-09-13", "dateModified": "2023-09-13", "datePublished": "2023-09-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Desmospora profundinema" ], "sample_taxid": [ "1571184" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.038 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3651457", "Number of Sequences": "18", "Longest Sequences (bp)": "761704", "N50 (bp)": "542699", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.2", "Number of CDSs": "3580", "Average Protein Length": "288.9", "Coding Ratio (%)": "85.0", "Number of rRNAs": "1", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desmospora activa", "strain": "strain=DSM 45169", "accession": "GCA_003046315.1", "taxid": 500615, "species_taxid": 500615, "relation_to_type": "type", "validated": true, "ani": 78.4294, "matched_fragments": 396, 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"organism_name": "Kroppenstedtia pulmonis", "strain": "strain=W9323", "accession": "GCA_013265585.1", "taxid": 1380685, "species_taxid": 1380685, "relation_to_type": "type", "validated": true, "ani": 76.6489, "matched_fragments": 96, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Melghirimyces thermohalophilus", "strain": "strain=DSM 45514", "accession": "GCA_900102685.1", "taxid": 1236220, "species_taxid": 1236220, "relation_to_type": "type", "validated": true, "ani": 76.5287, "matched_fragments": 133, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marininema halotolerans", "strain": "strain=DSM 45789", "accession": "GCA_900116235.1", "taxid": 1155944, "species_taxid": 1155944, "relation_to_type": "type", "validated": true, "ani": 76.4179, "matched_fragments": 56, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planifilum fimeticola", 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Desmospora", "profundinema" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }