{ "type": "genome", "identifier": "GCF_031454175.1", "organism": "Paenibacillus hunanensis", "title": "Paenibacillus hunanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_031454175.1", "bioproject": "PRJNA224116", "biosample": "SAMN17619983", "wgs_master": "JAVDQH000000000.1", "refseq_category": "na", "taxid": "539262", "species_taxid": "539262", "organism_name": "Paenibacillus hunanensis", "infraspecific_name": "strain=DSM 22170", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/09/13", "asm_name": "ASM3145417v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_031454175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/031/454/175/GCF_031454175.1_ASM3145417v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5638794", "genome_size_ungapped": "5638794", "gc_percent": "46.500000", "replicon_count": "0", "scaffold_count": "56", "contig_count": "56", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_031454175.1-RS_2024_09_15", "annotation_date": "2024-09-15", "total_gene_count": "4722", "protein_coding_gene_count": "4600", "non_coding_gene_count": "93", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-09-13", "dateModified": "2023-09-13", "datePublished": "2023-09-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus hunanensis" ], "sample_taxid": [ "539262" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Hunan Province" ], "sample_host_location_id": [], "data_size": "1.607 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5638794", "Number of Sequences": "56", "Longest Sequences (bp)": "518611", "N50 (bp)": "271636", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.5", "Number of CDSs": "4716", "Average Protein Length": "318.8", "Coding Ratio (%)": "80.0", "Number of rRNAs": "1", "Number of tRNAs": "73", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus hunanensis", "strain": "strain=CGMCC 1.8907", "accession": "GCA_014645615.1", "taxid": 539262, "species_taxid": 539262, "relation_to_type": "type", "validated": true, "ani": 99.9986, "matched_fragments": 1840, "total_fragments": 1850, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paenibacillus bovis", "strain": "strain=BD3526", "accession": "GCA_001421015.2", "taxid": 1616788, "species_taxid": 1616788, "relation_to_type": "type", "validated": true, "ani": 79.2397, "matched_fragments": 670, "total_fragments": 1850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus dauci", "strain": "strain=H9", "accession": "GCA_000971985.1", "taxid": 1567106, "species_taxid": 1567106, "relation_to_type": "type", "validated": true, "ani": 79.149, "matched_fragments": 650, "total_fragments": 1850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus wulumuqiensis", "strain": "strain=Y24", "accession": "GCA_000971965.1", "taxid": 1567107, "species_taxid": 1567107, "relation_to_type": "type", "validated": true, "ani": 79.0934, "matched_fragments": 680, "total_fragments": 1850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus nuruki", "strain": "strain=TI45-13ar", "accession": "GCA_001721045.1", "taxid": 1886670, "species_taxid": 1886670, "relation_to_type": "type", "validated": true, "ani": 77.6444, "matched_fragments": 326, "total_fragments": 1850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus silvae", "strain": "strain=CGMCC 1.12770", "accession": "GCA_014639235.1", "taxid": 1325358, "species_taxid": 1325358, "relation_to_type": "type", "validated": true, "ani": 77.432, "matched_fragments": 156, "total_fragments": 1850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus gallinarum", "strain": "strain=Sa2BVA9", "accession": "GCA_014836635.1", "taxid": 2762232, "species_taxid": 2762232, "relation_to_type": "type", "validated": true, "ani": 77.4197, "matched_fragments": 78, "total_fragments": 1850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus taichungensis", "strain": "strain=DSM 19942", "accession": "GCA_013359905.1", "taxid": 484184, "species_taxid": 484184, "relation_to_type": "type", "validated": true, "ani": 77.1795, "matched_fragments": 141, "total_fragments": 1850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus dokdonensis", "strain": "strain=YH-JAE5", "accession": "GCA_004916975.1", "taxid": 2567944, "species_taxid": 2567944, "relation_to_type": "type", "validated": true, "ani": 77.1322, "matched_fragments": 107, "total_fragments": 1850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus lupini", "strain": "strain=CECT 8235", "accession": "GCA_011761355.1", "taxid": 1450204, "species_taxid": 1450204, "relation_to_type": "type", "validated": true, "ani": 77.104, "matched_fragments": 70, "total_fragments": 1850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus rhizophilus", "strain": "strain=7197", "accession": "GCA_003854965.1", "taxid": 1850366, "species_taxid": 1850366, "relation_to_type": "type", "validated": true, "ani": 76.9008, "matched_fragments": 69, "total_fragments": 1850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharibacillus qingshengii", "strain": "strain=JCM 31172", "accession": "GCA_013185195.1", "taxid": 1763540, "species_taxid": 1763540, "relation_to_type": "type", "validated": true, "ani": 76.6686, "matched_fragments": 111, "total_fragments": 1850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus piscarius", "strain": "strain=P121", "accession": "GCA_022234545.1", "taxid": 1089681, "species_taxid": 1089681, "relation_to_type": "type", "validated": true, "ani": 76.6032, "matched_fragments": 104, "total_fragments": 1850, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": 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"gtdb_species": "s__Paenibacillus_J dauci", "ani": 79.1565, "matched_fragments": 647, "total_fragments": 1850, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_J", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.87", "min_intra_species_ani": "97.87", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000971965.1", "gtdb_species": "s__Paenibacillus_J wulumuqiensis", "ani": 79.1064, "matched_fragments": 679, "total_fragments": 1850, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_J", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001721045.1", "gtdb_species": "s__Paenibacillus_J nuruki", "ani": 77.6444, "matched_fragments": 326, "total_fragments": 1850, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_J", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.40", "min_intra_species_ani": "98.40", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_016908805.1", "gtdb_species": "s__Paenibacillus_J nicotianae", "ani": 77.5706, "matched_fragments": 359, "total_fragments": 1850, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_J", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014639235.1", "gtdb_species": "s__Paenibacillus silvae", "ani": 77.3838, "matched_fragments": 154, "total_fragments": 1850, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.52", "min_intra_species_ani": "95.24", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.86", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_004916975.1", "gtdb_species": "s__Paenibacillus dokdonensis", "ani": 77.1321, "matched_fragments": 106, "total_fragments": 1850, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011761355.1", "gtdb_species": "s__Paenibacillus_C lupini", "ani": 77.1071, "matched_fragments": 69, "total_fragments": 1850, "gtdb_taxonomy": 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"d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.74", "min_intra_species_ani": "97.74", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003854965.1", "gtdb_species": "s__Paenibacillus sp003854965", "ani": 76.9223, "matched_fragments": 71, "total_fragments": 1850, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.02", "min_intra_species_ani": "95.02", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013185195.1", "gtdb_species": "s__Saccharibacillus qingshengii", "ani": 76.6665, "matched_fragments": 110, "total_fragments": 1850, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Saccharibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.111, "cell_length": 0.366, "doubling_h": 0.565, "growth_tmp": 29.0, "optimum_tmp": 30.0, "optimum_ph": 7.5, "genome_size": 6197949.921, "gc_content": 50.283, "coding_genes": 5381.029, "rRNA16S_genes": 10.237, "tRNA_genes": 93.313, "gram_stain": 1.0, "sporulation": 1.0, "motility": 1.0, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.9, "thermophilic_range_tmp": 0.033, "psychrophilic_range_tmp": 0.066, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Paenibacillus", "hunanensis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }