{ "type": "genome", "identifier": "GCF_031458175.1", "organism": "Pseudoglutamicibacter albus", "title": "Pseudoglutamicibacter albus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_031458175.1", "bioproject": "PRJNA224116", "biosample": "SAMN18243394", "wgs_master": "JAVDXX000000000.1", "refseq_category": "reference genome", "taxid": "98671", "species_taxid": "98671", "organism_name": "Pseudoglutamicibacter albus", "infraspecific_name": "strain=DSM 13068", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/09/13", "asm_name": "ASM3145817v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_031458175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/031/458/175/GCF_031458175.1_ASM3145817v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2222850", "genome_size_ungapped": "2222850", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_031458175.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "1970", "protein_coding_gene_count": "1883", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-09-13", "dateModified": "2023-09-13", "datePublished": "2023-09-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoglutamicibacter albus" ], "sample_taxid": [ "98671" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Belgium" ], "sample_host_location_id": [], "data_size": "0.627 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2222850", "Number of Sequences": "1", "Longest Sequences (bp)": "2222850", "N50 (bp)": "2222850", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.2", "Number of CDSs": "1927", "Average Protein Length": "339.2", "Coding Ratio (%)": "88.2", "Number of rRNAs": "9", "Number of tRNAs": "47", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoglutamicibacter cumminsii", "strain": "strain=DSM 10493", "accession": "GCA_016907775.1", "taxid": 156979, "species_taxid": 156979, "relation_to_type": "type", "validated": true, "ani": 85.032, "matched_fragments": 580, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium ravenspurgense", "strain": "strain=CCUG56047", "accession": "GCA_001584615.1", "taxid": 479117, "species_taxid": 479117, "relation_to_type": "type", "validated": true, "ani": 78.6775, "matched_fragments": 63, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zhihengliuella flava", "strain": "strain=DSM 26152", "accession": "GCA_015751895.1", "taxid": 1285193, "species_taxid": 1285193, "relation_to_type": "type", "validated": true, "ani": 78.0492, "matched_fragments": 74, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glutamicibacter halophytocola", "strain": "strain=KLBMP 5180", "accession": "GCA_001302565.1", "taxid": 1933880, "species_taxid": 1933880, "relation_to_type": "type", "validated": true, "ani": 77.9952, "matched_fragments": 77, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia halotolerans", "strain": "strain=DSM 15474", "accession": "GCA_014874065.1", "taxid": 225325, "species_taxid": 225325, "relation_to_type": "type", "validated": true, "ani": 77.6417, "matched_fragments": 59, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glutamicibacter arilaitensis", "strain": "strain=Re117", "accession": "GCA_000197735.1", "taxid": 256701, "species_taxid": 256701, "relation_to_type": "type", "validated": true, "ani": 77.5759, "matched_fragments": 92, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia jeotgali", "strain": "strain=DSM 19081", "accession": "GCA_014138825.1", "taxid": 317018, "species_taxid": 317018, "relation_to_type": "type", "validated": true, "ani": 77.5448, "matched_fragments": 58, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sunyaminii", "strain": "strain=zg-ZUI122", "accession": "GCA_018866305.1", "taxid": 2816859, "species_taxid": 2816859, "relation_to_type": "type", "validated": true, "ani": 77.4853, "matched_fragments": 79, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paeniglutamicibacter kerguelensis", "strain": "strain=DSM 15797", "accession": "GCA_017876535.1", "taxid": 254788, "species_taxid": 254788, "relation_to_type": "type", "validated": true, "ani": 77.4573, "matched_fragments": 99, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zhihengliuella salsuginis", "strain": "strain=KCTC 19466", "accession": "GCA_014651715.1", "taxid": 578222, "species_taxid": 578222, "relation_to_type": "type", "validated": true, "ani": 77.1967, "matched_fragments": 87, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paeniglutamicibacter gangotriensis", "strain": "strain=Lz1y", "accession": "GCA_000348945.1", "taxid": 254787, "species_taxid": 254787, "relation_to_type": "type", "validated": true, "ani": 77.0964, "matched_fragments": 70, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glutamicibacter mysorens", "strain": "strain=NBRC 103060", "accession": "GCA_001552115.1", "taxid": 257984, "species_taxid": 257984, "relation_to_type": "type", "validated": true, "ani": 77.0117, "matched_fragments": 79, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinomonas notoginsengisoli", "strain": "strain=KCTC 29237", "accession": "GCA_021554725.1", "taxid": 1457311, "species_taxid": 1457311, "relation_to_type": "type", "validated": true, "ani": 77.0065, "matched_fragments": 63, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glutamicibacter uratoxydans", "strain": "strain=NBRC 15515", "accession": "GCA_006539925.1", "taxid": 43667, "species_taxid": 43667, "relation_to_type": "type", "validated": true, "ani": 77.0014, "matched_fragments": 88, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Galactobacter valiniphilus", "strain": "strain=JZ R-35", "accession": "GCA_003575975.1", "taxid": 2676122, "species_taxid": 2676122, "relation_to_type": "type", "validated": true, "ani": 76.9969, "matched_fragments": 134, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sunyaminii", "strain": "strain=zg-ZUI122", "accession": "GCA_017353495.1", "taxid": 2816859, "species_taxid": 2816859, "relation_to_type": "type", "validated": true, "ani": 76.9299, "matched_fragments": 73, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter ulcerisalmonis", "strain": "", "accession": "GCA_900609065.1", "taxid": 2483813, "species_taxid": 2483813, "relation_to_type": "type", "validated": true, "ani": 76.8673, "matched_fragments": 58, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Galactobacter caseinivorans", "strain": "strain=JZ R-183", "accession": "GCA_003640665.1", "taxid": 2676123, "species_taxid": 2676123, "relation_to_type": "type", "validated": true, "ani": 76.787, "matched_fragments": 104, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter wenxiniae", "strain": "strain=AETb3-4", "accession": "GCA_013376105.1", "taxid": 2713570, "species_taxid": 2713570, "relation_to_type": "type", "validated": true, "ani": 76.7848, "matched_fragments": 59, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia cremea", "strain": "strain=CGMCC 1.15388", "accession": "GCA_014642675.1", "taxid": 1882340, "species_taxid": 1882340, "relation_to_type": "type", "validated": true, "ani": 76.7819, "matched_fragments": 56, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000758985.1", "gtdb_species": "s__Pseudoglutamicibacter albus_A", "ani": 98.1236, "matched_fragments": 676, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Pseudoglutamicibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.46", "min_intra_species_ani": "98.42", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_003143995.1", "gtdb_species": "s__Pseudoglutamicibacter cumminsii_A", "ani": 85.2991, "matched_fragments": 571, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Pseudoglutamicibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.00", "min_intra_species_ani": "96.00", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_016907775.1", "gtdb_species": "s__Pseudoglutamicibacter cumminsii", "ani": 85.0631, "matched_fragments": 580, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Pseudoglutamicibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001584615.1", "gtdb_species": "s__Brevibacterium ravenspurgense", "ani": 78.8769, "matched_fragments": 64, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Brevibacteriaceae;g__Brevibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.93", "min_intra_species_ani": "96.42", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_001302565.1", "gtdb_species": "s__Glutamicibacter halophytocola", "ani": 77.9057, "matched_fragments": 76, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Glutamicibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.28", "min_intra_species_ani": "98.01", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000197735.1", "gtdb_species": "s__Glutamicibacter arilaitensis", "ani": 77.8409, "matched_fragments": 94, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Glutamicibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.79", "min_intra_species_ani": "97.54", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.83", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_014874065.1", "gtdb_species": "s__Nesterenkonia halotolerans", "ani": 77.5189, "matched_fragments": 59, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Nesterenkonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017368795.1", "gtdb_species": "s__PO-11 sp017368795", "ani": 77.4477, "matched_fragments": 62, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__PO-11", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_019173455.1", "gtdb_species": "s__Nesterenkonia sp019173455", "ani": 77.2059, "matched_fragments": 58, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Nesterenkonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000348945.1", "gtdb_species": "s__Paeniglutamicibacter gangotriensis", "ani": 77.0964, "matched_fragments": 70, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Paeniglutamicibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.63", "min_intra_species_ani": "97.63", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003575975.1", "gtdb_species": "s__Galactobacter valiniphilus", "ani": 76.9594, "matched_fragments": 136, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Galactobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003640665.1", "gtdb_species": "s__Galactobacter caseinivorans", "ani": 76.8099, "matched_fragments": 103, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Galactobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000224415.1", "gtdb_species": "s__Citricoccus sp000224415", "ani": 76.5639, "matched_fragments": 80, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Citricoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.24", "min_intra_species_ani": "96.24", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 32.5, "optimum_tmp": null, "optimum_ph": null, "genome_size": 2476648.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Pseudoglutamicibacter", "albus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }