{ "type": "genome", "identifier": "GCF_031458215.1", "organism": "Nocardioides luteus", "title": "Nocardioides luteus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_031458215.1", "bioproject": "PRJNA224116", "biosample": "SAMN18243358", "wgs_master": "JAVDYA000000000.1", "refseq_category": "na", "taxid": "1844", "species_taxid": "1844", "organism_name": "Nocardioides luteus", "infraspecific_name": "strain=DSM 43366", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/09/13", "asm_name": "ASM3145821v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_031458215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/031/458/215/GCF_031458215.1_ASM3145821v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5013609", "genome_size_ungapped": "5013609", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_031458215.1-RS_2024_09_15", "annotation_date": "2024-09-15", "total_gene_count": "4855", "protein_coding_gene_count": "4771", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-09-13", "dateModified": "2023-09-13", "datePublished": "2023-09-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides luteus" ], "sample_taxid": [ "1844" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], 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"GCA_016735675.1", "taxid": 2801337, "species_taxid": 2801337, "relation_to_type": "type", "validated": true, "ani": 79.4397, "matched_fragments": 631, "total_fragments": 1671, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ganghwensis", "strain": "strain=9920", "accession": "GCA_014779655.1", "taxid": 252230, "species_taxid": 252230, "relation_to_type": "type", "validated": true, "ani": 79.4314, "matched_fragments": 623, "total_fragments": 1671, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides malaquae", "strain": "strain=Y6", "accession": "GCA_015070385.1", "taxid": 2773426, "species_taxid": 2773426, "relation_to_type": "type", "validated": true, "ani": 79.3709, "matched_fragments": 473, "total_fragments": 1671, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides sambongensis", "strain": "strain=KUDC 5002", "accession": "GCA_006494815.1", "taxid": 2589074, "species_taxid": 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