{ "type": "genome", "identifier": "GCF_031458235.1", "organism": "Catenuloplanes atrovinosus", "title": "Catenuloplanes atrovinosus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_031458235.1", "bioproject": "PRJNA224116", "biosample": "SAMN18243027", "wgs_master": "JAVDYB000000000.1", "refseq_category": "reference genome", "taxid": "137266", "species_taxid": "137266", "organism_name": "Catenuloplanes atrovinosus", "infraspecific_name": "strain=DSM 44707", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/09/13", "asm_name": "ASM3145823v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_031458235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/031/458/235/GCF_031458235.1_ASM3145823v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8906892", "genome_size_ungapped": "8906892", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_031458235.1-RS_2024_09_15", "annotation_date": "2024-09-15", "total_gene_count": "7976", "protein_coding_gene_count": "7794", "non_coding_gene_count": "77", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-09-13", "dateModified": "2023-09-13", "datePublished": "2023-09-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Catenuloplanes atrovinosus" ], "sample_taxid": [ "137266" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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95, "status": "below_threshold" }, { "organism_name": "Micromonospora pattaloongensis", "strain": "strain=DSM 45245", "accession": "GCA_900107255.1", "taxid": 405436, "species_taxid": 405436, "relation_to_type": "type", "validated": true, "ani": 79.3792, "matched_fragments": 1018, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 79.3681, "matched_fragments": 1011, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora mirobrigensis", "strain": "strain=DSM 44830", "accession": "GCA_900091555.1", "taxid": 262898, "species_taxid": 262898, "relation_to_type": "type", "validated": true, "ani": 79.307, "matched_fragments": 1097, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humi", "strain": "strain=DSM 45647", "accession": "GCA_900090105.1", "taxid": 745366, "species_taxid": 745366, "relation_to_type": "type", "validated": true, "ani": 79.2776, "matched_fragments": 1223, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora terminaliae", "strain": "strain=DSM 101760", "accession": "GCA_009671205.1", "taxid": 1914461, "species_taxid": 1914461, "relation_to_type": "type", "validated": true, "ani": 79.2558, "matched_fragments": 1162, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora siamensis", "strain": "strain=DSM 45097", "accession": "GCA_900090305.1", "taxid": 299152, "species_taxid": 299152, "relation_to_type": "type", "validated": true, "ani": 79.2544, "matched_fragments": 1135, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora 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"GCA_900090225.1", "taxid": 227316, "species_taxid": 227316, "relation_to_type": "type", "validated": true, "ani": 79.1171, "matched_fragments": 1092, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora endolithica", "strain": "strain=JCM 12677", "accession": "GCA_003626595.1", "taxid": 230091, "species_taxid": 230091, "relation_to_type": "type", "validated": true, "ani": 79.0939, "matched_fragments": 1121, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora sagamiensis", "strain": "strain=DSM 43912", "accession": "GCA_007829995.1", "taxid": 47875, "species_taxid": 47875, "relation_to_type": "type", "validated": true, "ani": 79.0444, "matched_fragments": 1102, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora fulviviridis", "strain": "strain=JCM 3259", "accession": "GCA_014648395.1", "taxid": 47860, "species_taxid": 47860, "relation_to_type": "type", "validated": true, "ani": 79.0289, "matched_fragments": 1234, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora wenchangensis", "strain": "strain=CCTCC AA 2012002", "accession": "GCA_002210435.1", "taxid": 1185415, "species_taxid": 1185415, "relation_to_type": "type", "validated": true, "ani": 78.9888, "matched_fragments": 1164, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes nipponensis", "strain": "strain=NBRC 14063", "accession": "GCA_016862275.1", "taxid": 135950, "species_taxid": 135950, "relation_to_type": "type", "validated": true, "ani": 78.9502, "matched_fragments": 1368, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes auranticolor", "strain": "strain=NBRC 12245", "accession": "GCA_018332655.1", "taxid": 47988, "species_taxid": 47988, "relation_to_type": "type", "validated": true, "ani": 78.8739, "matched_fragments": 1385, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora yangpuensis", "strain": "strain=DSM 45577", "accession": "GCA_900091615.1", "taxid": 683228, "species_taxid": 683228, "relation_to_type": "type", "validated": true, "ani": 78.7195, "matched_fragments": 1038, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora yangpuensis", "strain": "strain=CGMCC 4.5736", "accession": "GCA_014645775.1", "taxid": 683228, "species_taxid": 683228, "relation_to_type": "type", "validated": true, "ani": 78.6977, "matched_fragments": 1015, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes utahensis", "strain": "strain=NBRC 13244", "accession": "GCA_016862455.1", "taxid": 1869, "species_taxid": 1869, "relation_to_type": "type", "validated": true, "ani": 78.627, "matched_fragments": 1246, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes deccanensis", "strain": "strain=NBRC 13994", "accession": "GCA_016862115.1", "taxid": 113561, "species_taxid": 113561, "relation_to_type": "type", "validated": true, "ani": 78.5915, "matched_fragments": 1409, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phytohabitans rumicis", "strain": "strain=NBRC 108638", "accession": "GCA_011764445.1", "taxid": 1076125, "species_taxid": 1076125, "relation_to_type": "type", "validated": true, "ani": 78.5747, "matched_fragments": 1348, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phytohabitans houttuyneae", "strain": "strain=NBRC 108639", "accession": "GCA_011764425.1", "taxid": 1076126, "species_taxid": 1076126, "relation_to_type": "type", "validated": true, "ani": 78.544, "matched_fragments": 1384, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Asanoa iriomotensis", "strain": "strain=NBRC 100142", "accession": "GCA_016862515.1", "taxid": 234613, "species_taxid": 234613, "relation_to_type": "type", "validated": true, "ani": 78.5031, "matched_fragments": 1168, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes ferrugineus", "strain": "strain=NBRC 15555", "accession": "GCA_016862195.1", "taxid": 113564, "species_taxid": 113564, "relation_to_type": "type", "validated": true, "ani": 78.4145, "matched_fragments": 1215, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinispora oceanensis", "strain": "strain=CNT-138", "accession": "GCA_000514455.1", "taxid": 1050199, "species_taxid": 1050199, "relation_to_type": "type", "validated": true, "ani": 78.2291, "matched_fragments": 684, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinispora oceanensis", "strain": "strain=DSM 45547", "accession": "GCA_000383575.1", "taxid": 1050199, "species_taxid": 1050199, "relation_to_type": "type", "validated": true, "ani": 78.2161, "matched_fragments": 698, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium aurantiacum", "strain": "strain=NRRL B-8018", "accession": "GCA_025264705.1", "taxid": 35754, "species_taxid": 35754, "relation_to_type": "type", "validated": true, "ani": 77.6598, "matched_fragments": 1448, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium roseum", "strain": "strain=NRRL B-16295", "accession": "GCA_025264685.1", "taxid": 47989, "species_taxid": 47989, "relation_to_type": "type", "validated": true, "ani": 77.6009, "matched_fragments": 1009, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium fulvum", "strain": "strain=NRRL B-16292", "accession": "GCA_025137375.1", "taxid": 53359, "species_taxid": 53359, "relation_to_type": "type", "validated": true, "ani": 77.5628, "matched_fragments": 1186, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium matsuzakiense", "strain": "strain=NRRL B-16293", "accession": "GCA_025264725.1", "taxid": 53360, "species_taxid": 53360, "relation_to_type": "type", "validated": true, "ani": 77.4758, "matched_fragments": 1253, "total_fragments": 2968, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000717135.1", "gtdb_species": "s__Catenuloplanes japonicus", "ani": 86.5644, "matched_fragments": 2148, "total_fragments": 2968, "gtdb_taxonomy": 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