{ "type": "genome", "identifier": "GCF_031458315.1", "organism": "Corynebacterium felinum", "title": "Corynebacterium felinum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_031458315.1", "bioproject": "PRJNA224116", "biosample": "SAMN18243025", "wgs_master": "JAVDYF000000000.1", "refseq_category": "na", "taxid": "131318", "species_taxid": "131318", "organism_name": "Corynebacterium felinum", "infraspecific_name": "strain=DSM 44508", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/09/13", "asm_name": "ASM3145831v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_031458315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/031/458/315/GCF_031458315.1_ASM3145831v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3236053", "genome_size_ungapped": "3236053", "gc_percent": "54.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-09-16", "total_gene_count": "2714", "protein_coding_gene_count": "2614", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-09-13", "dateModified": "2023-09-13", "datePublished": "2023-09-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium felinum" ], "sample_taxid": [ "131318" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium diphtheriae", "strain": "strain=NCTC11397", "accession": "GCA_001457455.1", "taxid": 1717, "species_taxid": 1717, "relation_to_type": "type", "validated": true, "ani": 79.516, "matched_fragments": 119, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium mustelae", "strain": "strain=DSM 45274", "accession": "GCA_001020985.1", "taxid": 571915, "species_taxid": 571915, "relation_to_type": "type", "validated": true, "ani": 79.3604, "matched_fragments": 149, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium epidermidicanis", "strain": "strain=DSM 45586", "accession": "GCA_001021025.1", "taxid": 1050174, "species_taxid": 1050174, "relation_to_type": "type", "validated": true, "ani": 79.268, "matched_fragments": 97, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium hindlerae", "strain": "strain=NML 93-0612", "accession": "GCA_014117265.1", "taxid": 699041, "species_taxid": 699041, "relation_to_type": "type", "validated": true, "ani": 79.0013, "matched_fragments": 122, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium halotolerans", "strain": "strain=YIM 70093 = DSM 44683", "accession": "GCA_000341345.1", "taxid": 225326, "species_taxid": 225326, "relation_to_type": "type", "validated": true, "ani": 78.817, "matched_fragments": 115, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium vitaeruminis", "strain": "strain=DSM 20294", "accession": "GCA_000550805.1", "taxid": 38305, "species_taxid": 38305, "relation_to_type": "type", "validated": true, "ani": 78.8145, "matched_fragments": 163, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium glutamicum", "strain": "strain=ATCC 13032", "accession": "GCA_000011325.1", "taxid": 1718, "species_taxid": 1718, "relation_to_type": "type", "validated": true, "ani": 78.7583, "matched_fragments": 129, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium gerontici", "strain": "strain=W8", "accession": "GCA_003813985.1", "taxid": 2079234, "species_taxid": 2079234, "relation_to_type": "type", "validated": true, "ani": 78.7355, "matched_fragments": 114, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium rouxii", "strain": "strain=FRC0190", "accession": "GCA_902702935.1", "taxid": 2719119, "species_taxid": 2719119, "relation_to_type": "type", "validated": true, "ani": 78.732, "matched_fragments": 124, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium diphtheriae", "strain": "strain=DSM 44123", "accession": "GCA_001913265.1", "taxid": 1717, "species_taxid": 1717, "relation_to_type": "type", "validated": true, "ani": 78.7064, "matched_fragments": 112, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium striatum", "strain": "strain=NCTC764", "accession": "GCA_900447675.1", "taxid": 43770, "species_taxid": 43770, "relation_to_type": "type", "validated": true, "ani": 78.688, "matched_fragments": 105, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium glutamicum", "strain": "strain=ATCC 13032 substr. K051", "accession": "GCA_000382905.1", "taxid": 1718, "species_taxid": 1718, "relation_to_type": "type", "validated": true, "ani": 78.655, "matched_fragments": 129, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium glutamicum", "strain": "strain=ATCC 13032", "accession": "GCA_002847405.1", "taxid": 1718, "species_taxid": 1718, "relation_to_type": "type", "validated": true, "ani": 78.6461, "matched_fragments": 131, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium glutamicum", "strain": "strain=ATCC 13032", "accession": "GCA_011761195.1", "taxid": 1718, "species_taxid": 1718, "relation_to_type": "type", "validated": true, "ani": 78.4086, "matched_fragments": 136, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium striatum", "strain": "strain=FDAARGOS_1054", "accession": "GCA_016403285.1", "taxid": 43770, "species_taxid": 43770, "relation_to_type": "type", "validated": true, "ani": 78.3942, "matched_fragments": 104, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium maris", "strain": "strain=DSM 45190", "accession": "GCA_000442645.1", "taxid": 575200, "species_taxid": 575200, "relation_to_type": "type", "validated": true, "ani": 78.098, "matched_fragments": 88, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium frankenforstense", "strain": "strain=ST18", "accession": "GCA_001941485.1", "taxid": 1230998, "species_taxid": 1230998, "relation_to_type": "type", "validated": true, "ani": 78.0888, "matched_fragments": 92, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium striatum", "strain": "strain=NBRC 15291", "accession": "GCA_006538485.1", "taxid": 43770, "species_taxid": 43770, "relation_to_type": "type", "validated": true, "ani": 78.0561, "matched_fragments": 103, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium silvaticum", "strain": "strain=KL0182", "accession": "GCA_004382825.2", "taxid": 2320431, "species_taxid": 2320431, "relation_to_type": "type", "validated": true, "ani": 78.0115, "matched_fragments": 99, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium halotolerans", "strain": "strain=DSM 44683", "accession": "GCA_000688435.1", "taxid": 225326, "species_taxid": 225326, "relation_to_type": "type", "validated": true, "ani": 77.7508, "matched_fragments": 105, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium spheniscorum", "strain": "strain=CCUG 45512", "accession": "GCA_008693095.1", "taxid": 185761, "species_taxid": 185761, "relation_to_type": "type", "validated": true, "ani": 77.6834, "matched_fragments": 93, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium pollutisoli", "strain": "strain=VDS11", "accession": "GCA_900177745.1", "taxid": 1610489, "species_taxid": 1610489, "relation_to_type": "type", "validated": true, "ani": 77.6761, "matched_fragments": 106, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000833575.1", "gtdb_species": "s__Corynebacterium singulare", "ani": 79.4565, "matched_fragments": 81, "total_fragments": 1078, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.05", "min_intra_species_ani": "96.95", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.88", 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