{ "type": "genome", "identifier": "GCF_031593255.1", "organism": "Streptomyces janthinus", "title": "Streptomyces janthinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hunan University of Arts and Science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_031593255.1", "bioproject": "PRJNA224116", "biosample": "SAMN37342211", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "67308", "species_taxid": "67308", "organism_name": "Streptomyces janthinus", "infraspecific_name": "strain=JCM 4387", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/09/18", "asm_name": "ASM3159325v1", "asm_submitter": "Hunan University of Arts and Science", "gbrs_paired_asm": "GCA_031593255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/031/593/255/GCF_031593255.1_ASM3159325v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9451924", "genome_size_ungapped": "9451924", "gc_percent": "70.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_031593255.1-RS_2024_09_20", "annotation_date": "2024-09-20", "total_gene_count": "8695", "protein_coding_gene_count": "8350", "non_coding_gene_count": "93", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-09-18", "dateModified": "2023-09-18", "datePublished": "2023-09-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces janthinus" ], "sample_taxid": [ "67308" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Hunan" ], "sample_host_location_id": [], "data_size": "2.545 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 3.12, "strain_heterogeneity": 33.33, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9451924", "Number of Sequences": "2", "Longest Sequences (bp)": "9361893", "N50 (bp)": "9361893", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.7", "Number of CDSs": "8769", "Average Protein Length": "320.0", "Coding Ratio (%)": "89.1", "Number of rRNAs": "18", "Number of tRNAs": "85", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces janthinus", "strain": "strain=JCM 4387", "accession": "GCA_014649675.1", "taxid": 67308, "species_taxid": 67308, "relation_to_type": "type", "validated": true, "ani": 99.9775, "matched_fragments": 3107, "total_fragments": 3150, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Streptomyces violarus", "strain": "strain=JCM 4534", "accession": "GCA_014650255.1", "taxid": 67380, "species_taxid": 67380, "relation_to_type": "type", "validated": true, "ani": 96.9461, "matched_fragments": 2686, "total_fragments": 3150, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Streptomyces violarus", "strain": "strain=CECT 3237", "accession": "GCA_014191845.1", "taxid": 67380, "species_taxid": 67380, "relation_to_type": "type", "validated": true, "ani": 96.9091, "matched_fragments": 2692, "total_fragments": 3150, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Streptomyces purpurascens", "strain": "strain=JCM 4509", "accession": "GCA_014650155.1", "taxid": 1924, "species_taxid": 1924, "relation_to_type": "type", "validated": true, "ani": 95.6266, "matched_fragments": 2593, "total_fragments": 3150, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Streptomyces purpurascens", "strain": "strain=DSM 40310", "accession": "GCA_021390235.1", "taxid": 1924, "species_taxid": 1924, "relation_to_type": "type", "validated": true, "ani": 95.5918, "matched_fragments": 2576, "total_fragments": 3150, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Streptomyces lomondensis", "strain": "strain=DSM 41428", "accession": "GCA_021440105.1", "taxid": 68229, "species_taxid": 68229, "relation_to_type": "type", "validated": true, "ani": 91.3383, "matched_fragments": 2265, "total_fragments": 3150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cahuitamycinicus", "strain": "strain=13K301", "accession": "GCA_002891435.1", "taxid": 2070367, "species_taxid": 2070367, "relation_to_type": "type", "validated": true, "ani": 90.292, "matched_fragments": 1831, "total_fragments": 3150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces indiaensis", "strain": "strain=DSM 43803", "accession": "GCA_021474405.1", "taxid": 284033, "species_taxid": 284033, "relation_to_type": "type", "validated": true, "ani": 89.8657, "matched_fragments": 1934, "total_fragments": 3150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseicoloratus", "strain": "strain=TRM S81-3", "accession": "GCA_014534645.1", "taxid": 2752516, "species_taxid": 2752516, "relation_to_type": "type", "validated": true, "ani": 85.9897, "matched_fragments": 1822, "total_fragments": 3150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sporangiiformans", "strain": "strain=NEAU-SSA 1", "accession": "GCA_005768555.2", "taxid": 2315329, "species_taxid": 2315329, "relation_to_type": "type", "validated": true, "ani": 83.6974, "matched_fragments": 1915, "total_fragments": 3150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sporangiiformans", "strain": "strain=NEAU-SSA 1", "accession": "GCA_003568675.1", "taxid": 2315329, "species_taxid": 2315329, "relation_to_type": "type", "validated": true, "ani": 83.6805, "matched_fragments": 1919, "total_fragments": 3150, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 3.12, "strain_heterogeneity": 33.33 }, "gtdb_result": [ { "accession": "GCA_000715635.1", "gtdb_species": "s__Streptomyces violaceus", "ani": 97.3114, "matched_fragments": 2643, "total_fragments": 3150, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.39", "min_intra_species_ani": "95.19", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.83", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_018604545.1", "gtdb_species": "s__Streptomyces sp018604545", "ani": 94.0379, "matched_fragments": 2462, "total_fragments": 3150, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008705135.1", "gtdb_species": "s__Streptomyces coeruleorubidus", "ani": 91.627, "matched_fragments": 2489, "total_fragments": 3150, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.68", "min_intra_species_ani": "95.03", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_900236475.1", "gtdb_species": "s__Streptomyces chartreusis_D", "ani": 91.5192, "matched_fragments": 2398, "total_fragments": 3150, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_002148965.1", "gtdb_species": "s__Streptomyces swartbergensis", "ani": 91.3942, "matched_fragments": 2016, "total_fragments": 3150, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014651035.1", "gtdb_species": "s__Streptomyces lomondensis", "ani": 91.3369, "matched_fragments": 2281, "total_fragments": 3150, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002150735.1", "gtdb_species": "s__Streptomyces africanus", "ani": 91.2973, "matched_fragments": 2065, "total_fragments": 3150, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018195615.1", "gtdb_species": "s__Streptomyces tuirus_A", "ani": 91.1746, "matched_fragments": 2307, "total_fragments": 3150, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000158955.1", "gtdb_species": "s__Streptomyces viridochromogenes_B", "ani": 91.1113, "matched_fragments": 2282, "total_fragments": 3150, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000696115.1", "gtdb_species": "s__Streptomyces olindensis", "ani": 90.7941, "matched_fragments": 2319, "total_fragments": 3150, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014648995.1", "gtdb_species": "s__Streptomyces massasporeus", "ani": 90.6591, "matched_fragments": 2344, "total_fragments": 3150, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.09", "min_intra_species_ani": "95.23", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_014205055.1", "gtdb_species": "s__Streptomyces luteogriseus", "ani": 90.5798, "matched_fragments": 2284, "total_fragments": 3150, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.10", "min_intra_species_ani": "95.50", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_014651075.1", "gtdb_species": "s__Streptomyces djakartensis", "ani": 90.251, "matched_fragments": 2041, "total_fragments": 3150, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001685355.1", "gtdb_species": "s__Streptomyces lincolnensis", "ani": 86.0002, "matched_fragments": 2189, "total_fragments": 3150, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_014648815.1", "gtdb_species": "s__Streptomyces flaveolus", "ani": 85.8384, "matched_fragments": 1783, "total_fragments": 3150, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008042075.1", "gtdb_species": "s__Streptomyces sp008042075", "ani": 85.7913, "matched_fragments": 2058, "total_fragments": 3150, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015712165.1", "gtdb_species": "s__Streptomyces spinoverrucosus_A", "ani": 85.7628, "matched_fragments": 1935, "total_fragments": 3150, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014647975.1", "gtdb_species": "s__Streptomyces fumigatiscleroticus", "ani": 85.6555, "matched_fragments": 1843, "total_fragments": 3150, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003248315.1", "gtdb_species": "s__Streptomyces sp003248315", "ani": 85.5582, "matched_fragments": 1726, "total_fragments": 3150, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001282115.1", "gtdb_species": "s__Streptomyces sp001282115", "ani": 85.5389, "matched_fragments": 1714, "total_fragments": 3150, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001746295.1", "gtdb_species": "s__Streptomyces sp001746295", "ani": 85.2978, "matched_fragments": 2085, "total_fragments": 3150, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013362785.1", "gtdb_species": "s__Streptomyces sp013362785", "ani": 85.2021, "matched_fragments": 1569, "total_fragments": 3150, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005280195.1", "gtdb_species": "s__Streptomyces galbus", "ani": 84.6277, "matched_fragments": 1709, "total_fragments": 3150, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.26", "min_intra_species_ani": "98.53", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_005768555.2", "gtdb_species": "s__Streptomyces sporangiiformans", "ani": 83.6897, "matched_fragments": 1918, "total_fragments": 3150, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.93", "min_intra_species_ani": "95.85", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.201, "cell_length": -0.05, "doubling_h": 0.103, "growth_tmp": 26.5, "optimum_tmp": 29.036, "optimum_ph": 7.341, "genome_size": 8292419.302, "gc_content": 71.543, "coding_genes": 7141.289, "rRNA16S_genes": 6.155, "tRNA_genes": 67.804, "gram_stain": 1.0, "sporulation": 0.958, "motility": 0.049, "range_salinity": 0.666, "facultative_respiration": 0.0, "anaerobic_respiration": 0.005, "aerobic_respiration": 0.994, "mesophilic_range_tmp": 0.98, "thermophilic_range_tmp": 0.019, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.208, "coccus_cell_shape": 0.032, "filament_cell_shape": 0.582, "coccobacillus_cell_shape": 0.098, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.076 }, "_genome_taxon": [ "Streptomyces", "janthinus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }