{
    "type": "genome",
    "identifier": "GCF_031624295.1",
    "organism": "Haloarcula argentinensis",
    "title": "Haloarcula argentinensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Sevilla, Spain",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_031624295.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN28856363",
        "wgs_master": "JAMQCP000000000.1",
        "refseq_category": "reference genome",
        "taxid": "43776",
        "species_taxid": "43776",
        "organism_name": "Haloarcula argentinensis",
        "infraspecific_name": "strain=JCM 15760",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/09/18",
        "asm_name": "ASM3162429v1",
        "asm_submitter": "University of Sevilla, Spain",
        "gbrs_paired_asm": "GCA_031624295.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/031/624/295/GCF_031624295.1_ASM3162429v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from synonym type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "4034304",
        "genome_size_ungapped": "4034304",
        "gc_percent": "61.500000",
        "replicon_count": "0",
        "scaffold_count": "12",
        "contig_count": "12",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_031624295.1-RS_2024_11_26",
        "annotation_date": "2024-11-26",
        "total_gene_count": "4138",
        "protein_coding_gene_count": "4004",
        "non_coding_gene_count": "81",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-09-18",
    "dateModified": "2023-09-18",
    "datePublished": "2023-09-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Haloarcula argentinensis"
        ],
        "sample_taxid": [
            "43776"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.131 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4034304",
        "Number of Sequences": "12",
        "Longest Sequences (bp)": "1566442",
        "N50 (bp)": "1513543",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "61.3",
        "Number of CDSs": "4061",
        "Average Protein Length": "286.3",
        "Coding Ratio (%)": "86.5",
        "Number of rRNAs": "3",
        "Number of tRNAs": "70",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Haloarcula salaria",
                "strain": "strain=JCM 15759",
                "accession": "GCA_014647095.1",
                "taxid": 575195,
                "species_taxid": 575195,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.1606,
                "matched_fragments": 1135,
                "total_fragments": 1340,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Haloarcula sebkhae",
                "strain": "strain=JCM 19018",
                "accession": "GCA_014647415.1",
                "taxid": 932660,
                "species_taxid": 932660,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.2715,
                "matched_fragments": 1178,
                "total_fragments": 1340,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Haloarcula japonica",
                "strain": "strain=DSM 6131",
                "accession": "GCA_000336635.1",
                "taxid": 29282,
                "species_taxid": 29282,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.5193,
                "matched_fragments": 1079,
                "total_fragments": 1340,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloarcula marismortui",
                "strain": "strain=ATCC 43049",
                "accession": "GCA_005310945.1",
                "taxid": 2238,
                "species_taxid": 2238,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 90.5724,
                "matched_fragments": 1087,
                "total_fragments": 1340,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloarcula marismortui",
                "strain": "strain=ATCC 43049",
                "accession": "GCA_000011085.1",
                "taxid": 2238,
                "species_taxid": 2238,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 90.4799,
                "matched_fragments": 1095,
                "total_fragments": 1340,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloarcula sinaiiensis",
                "strain": "strain=ATCC 33800",
                "accession": "GCA_000337275.1",
                "taxid": 35742,
                "species_taxid": 35742,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 90.4279,
                "matched_fragments": 1092,
                "total_fragments": 1340,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloarcula sinaiiensis",
                "strain": "strain=ATCC 33800",
                "accession": "GCA_018200015.1",
                "taxid": 35742,
                "species_taxid": 35742,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 90.4223,
                "matched_fragments": 1099,
                "total_fragments": 1340,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 8.33,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_000336895.1",
                "gtdb_species": "s__Haloarcula argentinensis",
                "ani": 99.9249,
                "matched_fragments": 1317,
                "total_fragments": 1340,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Haloarcula",
                "ani_circumscription_radius": 95.2413,
                "mean_intra_species_ani": "99.05",
                "min_intra_species_ani": "99.05",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_014647415.1",
                "gtdb_species": "s__Haloarcula sebkhae",
                "ani": 95.2715,
                "matched_fragments": 1178,
                "total_fragments": 1340,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Haloarcula",
                "ani_circumscription_radius": 95.2413,
                "mean_intra_species_ani": "95.97",
                "min_intra_species_ani": "95.97",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_001485575.1",
                "gtdb_species": "s__Haloarcula sp001485575",
                "ani": 92.3025,
                "matched_fragments": 1146,
                "total_fragments": 1340,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Haloarcula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000336635.1",
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                "ani": 91.5193,
                "matched_fragments": 1079,
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Haloarcula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000223905.1",
                "gtdb_species": "s__Haloarcula hispanica",
                "ani": 90.5008,
                "matched_fragments": 1118,
                "total_fragments": 1340,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Haloarcula",
                "ani_circumscription_radius": 95.3005,
                "mean_intra_species_ani": "98.55",
                "min_intra_species_ani": "97.98",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_000011085.1",
                "gtdb_species": "s__Haloarcula marismortui",
                "ani": 90.4799,
                "matched_fragments": 1095,
                "total_fragments": 1340,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Haloarcula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.41",
                "min_intra_species_ani": "98.12",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 9,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": 0.0,
        "doubling_h": 0.771,
        "growth_tmp": 38.0,
        "optimum_tmp": 40.964,
        "optimum_ph": 6.787,
        "genome_size": 4147107.0,
        "gc_content": 59.226,
        "coding_genes": 3993.8,
        "rRNA16S_genes": 3.166,
        "tRNA_genes": 47.666,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.333,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Haloarcula",
        "argentinensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}