{ "type": "genome", "identifier": "GCF_031954365.1", "organism": "Brevibacillus aydinogluensis", "title": "Brevibacillus aydinogluensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_031954365.1", "bioproject": "PRJNA224116", "biosample": "SAMN35367906", "wgs_master": "JAUSVZ000000000.1", "refseq_category": "na", "taxid": "927786", "species_taxid": "927786", "organism_name": "Brevibacillus aydinogluensis", "infraspecific_name": "strain=PDF25", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/09/26", "asm_name": "ASM3195436v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_031954365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/031/954/365/GCF_031954365.1_ASM3195436v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4163703", "genome_size_ungapped": "4163703", "gc_percent": "56.000000", "replicon_count": "0", "scaffold_count": "56", "contig_count": "56", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_031954365.1-RS_2024_09_27", "annotation_date": "2024-09-27", "total_gene_count": "4149", "protein_coding_gene_count": "4008", "non_coding_gene_count": "100", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-09-26", "dateModified": "2023-09-26", "datePublished": "2023-09-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevibacillus aydinogluensis" ], "sample_taxid": [ "927786" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Turkey: Izmir" ], "sample_host_location_id": [], "data_size": "1.182 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4163703", "Number of Sequences": "56", "Longest Sequences (bp)": "439329", "N50 (bp)": "181749", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.9", "Number of CDSs": "4084", "Average Protein Length": "294.5", "Coding Ratio (%)": "86.7", "Number of rRNAs": "1", "Number of tRNAs": "85", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevibacillus gelatini", "strain": "strain=DSM 100115", "accession": "GCA_003710935.1", "taxid": 1655277, "species_taxid": 1655277, "relation_to_type": "type", "validated": true, "ani": 79.1637, "matched_fragments": 486, "total_fragments": 1361, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus composti", "strain": "strain=FJAT-54423", "accession": "GCA_016406105.1", "taxid": 2796470, "species_taxid": 2796470, "relation_to_type": "type", "validated": true, "ani": 78.6115, "matched_fragments": 477, "total_fragments": 1361, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus agri", "strain": "strain=NRRL NRS 1219", "accession": "GCA_003710885.1", "taxid": 51101, "species_taxid": 51101, "relation_to_type": "type", "validated": true, "ani": 78.3924, "matched_fragments": 431, "total_fragments": 1361, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus borstelensis", "strain": "strain=NRRL NRS 818", "accession": "GCA_003710865.1", "taxid": 45462, "species_taxid": 45462, "relation_to_type": "type", "validated": true, "ani": 78.3882, "matched_fragments": 488, "total_fragments": 1361, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus borstelensis", "strain": "strain=NBRC 15714", "accession": "GCA_006540165.1", "taxid": 45462, "species_taxid": 45462, "relation_to_type": "type", "validated": true, "ani": 78.3563, "matched_fragments": 486, "total_fragments": 1361, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus agri", "strain": "strain=DSM 6348", "accession": "GCA_004117055.1", "taxid": 51101, "species_taxid": 51101, "relation_to_type": "type", "validated": true, "ani": 78.3314, "matched_fragments": 433, "total_fragments": 1361, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus agri", "strain": "strain=NBRC 15538", "accession": "GCA_006540025.1", "taxid": 51101, "species_taxid": 51101, "relation_to_type": "type", "validated": true, "ani": 78.3135, "matched_fragments": 429, "total_fragments": 1361, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus panacihumi", "strain": "strain=JCM 15085", "accession": "GCA_003710985.1", "taxid": 497735, "species_taxid": 497735, "relation_to_type": "type", "validated": true, "ani": 77.8926, "matched_fragments": 326, "total_fragments": 1361, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus parabrevis", "strain": "strain=NRRL NRS 605", "accession": "GCA_003710905.1", "taxid": 54914, "species_taxid": 54914, "relation_to_type": "type", "validated": true, "ani": 77.658, "matched_fragments": 391, "total_fragments": 1361, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus parabrevis", "strain": "strain=NBRC 12334", "accession": "GCA_006539065.1", "taxid": 54914, "species_taxid": 54914, "relation_to_type": "type", "validated": true, "ani": 77.6284, "matched_fragments": 381, "total_fragments": 1361, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus marinus", "strain": "strain=SCSIO 07484", "accession": "GCA_003963515.1", "taxid": 2496837, "species_taxid": 2496837, "relation_to_type": "type", "validated": true, "ani": 77.5882, "matched_fragments": 292, "total_fragments": 1361, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus choshinensis", "strain": "strain=DSM 8552", "accession": "GCA_001420695.1", "taxid": 54911, "species_taxid": 54911, "relation_to_type": "type", "validated": true, "ani": 77.5872, "matched_fragments": 281, "total_fragments": 1361, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus brevis", "strain": "strain=NCTC2611", "accession": "GCA_900637055.1", "taxid": 1393, "species_taxid": 1393, "relation_to_type": "suspected-type", "validated": true, "ani": 77.4305, "matched_fragments": 250, "total_fragments": 1361, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus centrosporus", "strain": "strain=NBRC 15540", "accession": "GCA_006540045.1", "taxid": 54910, "species_taxid": 54910, "relation_to_type": "type", "validated": true, "ani": 77.4276, "matched_fragments": 308, "total_fragments": 1361, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus antri", "strain": "strain=SYSU K30003", "accession": "GCA_005765165.1", "taxid": 2582848, "species_taxid": 2582848, "relation_to_type": "type", "validated": true, "ani": 75.8182, "matched_fragments": 59, "total_fragments": 1361, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013096935.1", "gtdb_species": "s__Brevibacillus sp003388715", "ani": 99.467, "matched_fragments": 1222, "total_fragments": 1361, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.49", "min_intra_species_ani": "99.45", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_000454065.1", "gtdb_species": "s__Brevibacillus thermoruber", "ani": 92.1767, "matched_fragments": 1120, "total_fragments": 1361, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.54", "min_intra_species_ani": "98.43", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_003710935.1", "gtdb_species": "s__Brevibacillus gelatini", "ani": 79.1919, "matched_fragments": 483, "total_fragments": 1361, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018228725.1", "gtdb_species": "s__Brevibacillus sp018228725", "ani": 78.6252, "matched_fragments": 473, "total_fragments": 1361, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_011059135.1", "gtdb_species": "s__CFH-S0501 sp011059135", "ani": 78.4333, "matched_fragments": 356, "total_fragments": 1361, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__CFH-S0501", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003710865.1", "gtdb_species": "s__Brevibacillus borstelensis", "ani": 78.4072, "matched_fragments": 487, "total_fragments": 1361, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.53", "min_intra_species_ani": "99.39", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_004117055.1", "gtdb_species": "s__Brevibacillus agri", "ani": 78.3263, "matched_fragments": 433, "total_fragments": 1361, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.52", "min_intra_species_ani": "99.18", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_003710985.1", "gtdb_species": "s__Brevibacillus panacihumi", "ani": 77.9168, "matched_fragments": 323, "total_fragments": 1361, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003710905.1", "gtdb_species": "s__Brevibacillus parabrevis", "ani": 77.6758, "matched_fragments": 387, "total_fragments": 1361, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.83", "min_intra_species_ani": "96.13", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_003963515.1", "gtdb_species": "s__SCSIO-07484 sp003963515", "ani": 77.5886, "matched_fragments": 292, "total_fragments": 1361, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__SCSIO-07484", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017656235.1", "gtdb_species": "s__SCSIO-07484 sp017656235", "ani": 77.4143, "matched_fragments": 260, "total_fragments": 1361, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__SCSIO-07484", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002897295.1", "gtdb_species": "s__Brevibacillus reuszeri_A", "ani": 77.3297, "matched_fragments": 252, "total_fragments": 1361, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.18", "min_intra_species_ani": "96.18", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_015845845.1", "gtdb_species": "s__Paenibacillus_B dendritiformis_C", "ani": 75.9516, "matched_fragments": 64, "total_fragments": 1361, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.523, "cell_length": 0.301, "doubling_h": 0.285, "growth_tmp": 50.0, "optimum_tmp": 55.0, "optimum_ph": 7.0, "genome_size": 5734012.398, "gc_content": 49.472, "coding_genes": 5306.866, "rRNA16S_genes": 14.666, "tRNA_genes": 121.916, "gram_stain": 1.0, "sporulation": 1.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.857, "thermophilic_range_tmp": 0.142, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Brevibacillus", "aydinogluensis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }