{
    "type": "genome",
    "identifier": "GCF_032050975.1",
    "organism": "Candidatus Nitrospira allomarina",
    "title": "Candidatus Nitrospira allomarina",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Division of Microbial Ecology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_032050975.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN32641628",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "3020900",
        "species_taxid": "3020900",
        "organism_name": "Candidatus Nitrospira allomarina",
        "infraspecific_name": "strain=VA",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/09/27",
        "asm_name": "ASM3205097v1",
        "asm_submitter": "Division of Microbial Ecology",
        "gbrs_paired_asm": "GCA_032050975.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/032/050/975/GCF_032050975.1_ASM3205097v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4553057",
        "genome_size_ungapped": "4553057",
        "gc_percent": "50.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2023-09-29",
        "total_gene_count": "3952",
        "protein_coding_gene_count": "3860",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-09-27",
    "dateModified": "2023-09-27",
    "datePublished": "2023-09-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Nitrospira allomarina"
        ],
        "sample_taxid": [
            "3020900"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Burrard Inlet, Vancouver"
        ],
        "sample_host_location_id": [],
        "data_size": "1.295 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4553057",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4553057",
        "N50 (bp)": "4553057",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "50.0",
        "Number of CDSs": "3976",
        "Average Protein Length": "311.5",
        "Coding Ratio (%)": "81.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_902500695.1",
                "gtdb_species": "s__UBA8639 sp902500695",
                "ani": 85.8625,
                "matched_fragments": 1072,
                "total_fragments": 1517,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__UBA8639;g__UBA8639",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013817135.1",
                "gtdb_species": "s__UBA8639 sp013817135",
                "ani": 85.8563,
                "matched_fragments": 613,
                "total_fragments": 1517,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__UBA8639;g__UBA8639",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003523945.1",
                "gtdb_species": "s__UBA8639 sp003523945",
                "ani": 84.1958,
                "matched_fragments": 822,
                "total_fragments": 1517,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__UBA8639;g__UBA8639",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009377845.1",
                "gtdb_species": "s__UBA8639 sp009377845",
                "ani": 80.1743,
                "matched_fragments": 589,
                "total_fragments": 1517,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__UBA8639;g__UBA8639",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003235785.1",
                "gtdb_species": "s__UBA8639 sp003235785",
                "ani": 77.3548,
                "matched_fragments": 133,
                "total_fragments": 1517,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__UBA8639;g__UBA8639",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003228495.1",
                "gtdb_species": "s__UBA8639 sp003228495",
                "ani": 76.833,
                "matched_fragments": 100,
                "total_fragments": 1517,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__UBA8639;g__UBA8639",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Candidatus",
        "Nitrospira",
        "allomarina"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}