{ "type": "genome", "identifier": "GCF_032595355.1", "organism": "Sedimentitalea todarodis", "title": "Sedimentitalea todarodis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third Institute of Oceanography, Ministry of Natural Resources of PR China", "publication": [ {} ], "properties": { "assembly_accession": "GCF_032595355.1", "bioproject": "PRJNA224116", "biosample": "SAMN35370963", "wgs_master": "JASMWN000000000.1", "refseq_category": "reference genome", "taxid": "1631240", "species_taxid": "1631240", "organism_name": "Sedimentitalea todarodis", "infraspecific_name": "strain=KHS03", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/10/12", "asm_name": "ASM3259535v1", "asm_submitter": "Third Institute of Oceanography, Ministry of Natural Resources of PR China", "gbrs_paired_asm": "GCA_032595355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/032/595/355/GCF_032595355.1_ASM3259535v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5381399", "genome_size_ungapped": "5381399", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "82", "contig_count": "82", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_032595355.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "5236", "protein_coding_gene_count": "5053", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-10-12", "dateModified": "2023-10-12", "datePublished": "2023-10-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Sedimentitalea todarodis" ], "sample_taxid": [ "1631240" ], "sample_host_organism": [ "Todarodes pacificus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.521 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5381399", "Number of Sequences": "82", "Longest Sequences (bp)": "560593", "N50 (bp)": "169653", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.6", "Number of CDSs": "5172", "Average Protein Length": "305.7", "Coding Ratio (%)": "88.1", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Antarcticimicrobium luteum", "strain": "strain=318-1", "accession": "GCA_004358185.1", "taxid": 2547397, "species_taxid": 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"total_fragments": 1749, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter sabulilitoris", "strain": "strain=HSMS-29", "accession": "GCA_005887615.1", "taxid": 2562655, "species_taxid": 2562655, "relation_to_type": "type", "validated": true, "ani": 77.7479, "matched_fragments": 416, "total_fragments": 1749, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagivirga dicentrarchi", "strain": "strain=YLY04", "accession": "GCA_003316635.1", "taxid": 2250573, "species_taxid": 2250573, "relation_to_type": "type", "validated": true, "ani": 77.7421, "matched_fragments": 281, "total_fragments": 1749, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leisingera aquaemixtae", "strain": "strain=CECT 8399", "accession": "GCA_001458395.1", "taxid": 1396826, "species_taxid": 1396826, "relation_to_type": "type", "validated": true, "ani": 77.7068, "matched_fragments": 407, "total_fragments": 1749, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagivirga sediminicola", "strain": "strain=BH-SD19", "accession": "GCA_003072125.1", "taxid": 2170575, "species_taxid": 2170575, "relation_to_type": "type", "validated": true, "ani": 77.6951, "matched_fragments": 310, "total_fragments": 1749, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutimaribacter saemankumensis", "strain": "strain=DSM 28010", "accession": "GCA_900100005.1", "taxid": 490829, "species_taxid": 490829, "relation_to_type": "type", "validated": true, "ani": 77.6267, "matched_fragments": 347, "total_fragments": 1749, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius faecimaris", "strain": "strain=MME-070", "accession": "GCA_009762325.1", "taxid": 2494550, "species_taxid": 2494550, "relation_to_type": "type", "validated": true, "ani": 77.6145, "matched_fragments": 315, "total_fragments": 1749, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivita boseongensis", "strain": "strain=BS-B2", "accession": "GCA_001262635.1", "taxid": 1470562, "species_taxid": 1470562, "relation_to_type": "type", "validated": true, "ani": 77.6085, "matched_fragments": 350, "total_fragments": 1749, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius mangrovi", "strain": "strain=GS-10", "accession": "GCA_009857745.1", "taxid": 2692236, "species_taxid": 2692236, "relation_to_type": "type", "validated": true, "ani": 77.4777, "matched_fragments": 379, "total_fragments": 1749, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger marinus", "strain": "strain=DSM 26424", "accession": "GCA_900100085.1", "taxid": 555512, "species_taxid": 555512, "relation_to_type": "type", "validated": true, "ani": 77.2927, "matched_fragments": 371, "total_fragments": 1749, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius litorisediminis", "strain": "strain=CECT 8287", "accession": "GCA_900172295.1", "taxid": 1312363, "species_taxid": 1312363, "relation_to_type": "type", "validated": true, "ani": 77.2608, "matched_fragments": 236, "total_fragments": 1749, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria conchae", "strain": "strain=TW15", "accession": "GCA_000192475.2", "taxid": 981384, "species_taxid": 981384, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2256, "matched_fragments": 258, "total_fragments": 1749, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria conchae", "strain": "strain=DSM 29317", "accession": "GCA_003664205.1", "taxid": 981384, "species_taxid": 981384, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2139, "matched_fragments": 257, "total_fragments": 1749, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinihabitans flavidus", "strain": "strain=DSM 27842", "accession": 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2771008, "relation_to_type": "type", "validated": true, "ani": 76.8581, "matched_fragments": 236, "total_fragments": 1749, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus salsus", "strain": "strain=EGI L200073", "accession": "GCA_021556615.1", "taxid": 2911061, "species_taxid": 2911061, "relation_to_type": "type", "validated": true, "ani": 76.7829, "matched_fragments": 189, "total_fragments": 1749, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudogemmobacter hezensis", "strain": "strain=D13-10-4-6", "accession": "GCA_013155295.1", "taxid": 2737662, "species_taxid": 2737662, "relation_to_type": "type", "validated": true, "ani": 76.4706, "matched_fragments": 151, "total_fragments": 1749, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000473225.1", "gtdb_species": "s__Sedimentitalea 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77.8777, "matched_fragments": 441, "total_fragments": 1749, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Ruegeria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000620505.1", "gtdb_species": "s__Ascidiaceihabitans sp000620505", "ani": 77.8604, "matched_fragments": 403, "total_fragments": 1749, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Ascidiaceihabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900109145.1", "gtdb_species": "s__Marinovum algicola", "ani": 77.8209, 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