{
    "type": "genome",
    "identifier": "GCF_900002825.1",
    "organism": "Romboutsia lituseburensis",
    "title": "Romboutsia lituseburensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WUR",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900002825.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA2775047",
        "wgs_master": "CDAA00000000.1",
        "refseq_category": "na",
        "taxid": "1537",
        "species_taxid": "1537",
        "organism_name": "Romboutsia lituseburensis",
        "infraspecific_name": "strain=A25K",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/08/08",
        "asm_name": "Romboutsia_lituseburensis_assembly1",
        "asm_submitter": "WUR",
        "gbrs_paired_asm": "GCA_900002825.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/002/825/GCF_900002825.1_Romboutsia_lituseburensis_assembly1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3878773",
        "genome_size_ungapped": "3874116",
        "gc_percent": "28.000000",
        "replicon_count": "0",
        "scaffold_count": "3",
        "contig_count": "3",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900002825.1-RS_2024_04_21",
        "annotation_date": "2024-04-21",
        "total_gene_count": "3812",
        "protein_coding_gene_count": "3608",
        "non_coding_gene_count": "173",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-08-08",
    "dateModified": "2018-08-08",
    "datePublished": "2018-08-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Romboutsia lituseburensis"
        ],
        "sample_taxid": [
            "1537"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.033 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3878673",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "3776615",
        "N50 (bp)": "3776615",
        "Gap Ratio (%)": "0.117514",
        "GCcontent (%)": "28.2",
        "Number of CDSs": "3688",
        "Average Protein Length": "294.5",
        "Coding Ratio (%)": "84.0",
        "Number of rRNAs": "53",
        "Number of tRNAs": "117",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Romboutsia lituseburensis",
                "strain": "strain=A25K",
                "accession": "GCA_900002825.1",
                "taxid": 1537,
                "species_taxid": 1537,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1290,
                "total_fragments": 1291,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Romboutsia lituseburensis",
                "strain": "strain=DSM 797",
                "accession": "GCA_900103615.1",
                "taxid": 1537,
                "species_taxid": 1537,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9796,
                "matched_fragments": 1238,
                "total_fragments": 1291,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Romboutsia hominis",
                "strain": "strain=FRIFI",
                "accession": "GCA_900002575.1",
                "taxid": 1507512,
                "species_taxid": 1507512,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6827,
                "matched_fragments": 565,
                "total_fragments": 1291,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Clostridium] dakarense",
                "strain": "strain=FF1",
                "accession": "GCA_000499525.1",
                "taxid": 1301100,
                "species_taxid": 1301100,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4117,
                "matched_fragments": 590,
                "total_fragments": 1291,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Romboutsia ilealis",
                "strain": "strain=CRIB",
                "accession": "GCA_900015215.1",
                "taxid": 1115758,
                "species_taxid": 1115758,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1907,
                "matched_fragments": 446,
                "total_fragments": 1291,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Romboutsia timonensis",
                "strain": "strain=Marseille-P326",
                "accession": "GCA_900106845.1",
                "taxid": 1776391,
                "species_taxid": 1776391,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9697,
                "matched_fragments": 462,
                "total_fragments": 1291,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900103615.1",
                "gtdb_species": "s__Romboutsia_D lituseburensis",
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                "matched_fragments": 1238,
                "total_fragments": 1291,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_000686145.1",
                "gtdb_species": "s__Romboutsia_D sp000686145",
                "ani": 82.1711,
                "matched_fragments": 661,
                "total_fragments": 1291,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900002575.1",
                "gtdb_species": "s__Romboutsia_C hominis",
                "ani": 81.7342,
                "matched_fragments": 562,
                "total_fragments": 1291,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.29",
                "min_intra_species_ani": "95.25",
                "mean_intra_species_af": "0.93",
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                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_018336475.1",
                "gtdb_species": "s__Romboutsia sp018336475",
                "ani": 81.5861,
                "matched_fragments": 424,
                "total_fragments": 1291,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000499525.1",
                "gtdb_species": "s__CCUG-7971 spG000499525",
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                "matched_fragments": 588,
                "total_fragments": 1291,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__CCUG-7971",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900015215.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia",
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                "mean_intra_species_ani": "98.59",
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            {
                "accession": "GCF_017590215.1",
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                "matched_fragments": 610,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__CCUG-7971",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_904418825.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia",
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                "mean_intra_species_ani": "99.17",
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            },
            {
                "accession": "GCF_900106845.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia",
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            },
            {
                "accession": "GCA_017425305.1",
                "gtdb_species": "s__Paraclostridium sp017425305",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Paraclostridium",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.146,
        "cell_length": 0.491,
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        "growth_tmp": 37.0,
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        "genome_size": 3782458.0,
        "gc_content": null,
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        "rRNA16S_genes": null,
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        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": null,
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        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 1.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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        "spiral_cell_shape": 0.0
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    "_genome_taxon": [
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        "lituseburensis"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}