{
    "type": "genome",
    "identifier": "GCF_900018365.1",
    "organism": "Apibacter mensalis",
    "title": "Apibacter mensalis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900018365.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03992719",
        "wgs_master": "FCOR00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1586267",
        "species_taxid": "1586267",
        "organism_name": "Apibacter mensalis",
        "infraspecific_name": "strain=R-53146",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/01/29",
        "asm_name": "IMG-taxon 2615840617 annotated assembly",
        "asm_submitter": "DOE - Joint Genome Institute",
        "gbrs_paired_asm": "GCA_900018365.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/018/365/GCF_900018365.1_IMG-taxon_2615840617_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2331098",
        "genome_size_ungapped": "2326086",
        "gc_percent": "30.500000",
        "replicon_count": "0",
        "scaffold_count": "42",
        "contig_count": "42",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900018365.1-RS_2024_10_22",
        "annotation_date": "2024-10-22",
        "total_gene_count": "2117",
        "protein_coding_gene_count": "2048",
        "non_coding_gene_count": "46",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-01-29",
    "dateModified": "2016-01-29",
    "datePublished": "2016-01-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Apibacter mensalis"
        ],
        "sample_taxid": [
            "1586267"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.644 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2331098",
        "Number of Sequences": "42",
        "Longest Sequences (bp)": "308349",
        "N50 (bp)": "183104",
        "Gap Ratio (%)": "0.215006",
        "GCcontent (%)": "30.5",
        "Number of CDSs": "2029",
        "Average Protein Length": "318.9",
        "Coding Ratio (%)": "83.3",
        "Number of rRNAs": "4",
        "Number of tRNAs": "38",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Apibacter mensalis",
                "strain": "strain=R-53146",
                "accession": "GCA_900018365.1",
                "taxid": 1586267,
                "species_taxid": 1586267,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 751,
                "total_fragments": 755,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Apibacter mensalis",
                "strain": "strain=R-53146",
                "accession": "GCA_001418685.1",
                "taxid": 1586267,
                "species_taxid": 1586267,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 751,
                "total_fragments": 755,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Apibacter raozihei",
                "strain": "strain=HY041",
                "accession": "GCA_004014855.1",
                "taxid": 2500547,
                "species_taxid": 2500547,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6038,
                "matched_fragments": 200,
                "total_fragments": 755,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Apibacter adventoris",
                "strain": "strain=wkB301",
                "accession": "GCA_002964975.1",
                "taxid": 1679466,
                "species_taxid": 1679466,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4825,
                "matched_fragments": 253,
                "total_fragments": 755,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Apibacter muscae",
                "strain": "strain=G8",
                "accession": "GCA_007845635.1",
                "taxid": 2509004,
                "species_taxid": 2509004,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1227,
                "matched_fragments": 151,
                "total_fragments": 755,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001418685.1",
                "gtdb_species": "s__Apibacter mensalis",
                "ani": 100.0,
                "matched_fragments": 752,
                "total_fragments": 755,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Apibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_011082725.1",
                "gtdb_species": "s__Apibacter sp002964915",
                "ani": 84.7882,
                "matched_fragments": 617,
                "total_fragments": 755,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Apibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.29",
                "min_intra_species_ani": "96.74",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 15,
                "status": "-"
            },
            {
                "accession": "GCF_004014855.1",
                "gtdb_species": "s__Apibacter raozihei",
                "ani": 77.6358,
                "matched_fragments": 198,
                "total_fragments": 755,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Apibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.39",
                "min_intra_species_ani": "98.39",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002964975.1",
                "gtdb_species": "s__Apibacter adventoris",
                "ani": 77.4703,
                "matched_fragments": 254,
                "total_fragments": 755,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Apibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.15",
                "min_intra_species_ani": "98.15",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_007845635.1",
                "gtdb_species": "s__Apibacter muscae",
                "ani": 77.1768,
                "matched_fragments": 148,
                "total_fragments": 755,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Apibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.91",
                "min_intra_species_ani": "97.54",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003710065.1",
                "gtdb_species": "s__Chryseobacterium nematophagum_B",
                "ani": 76.141,
                "matched_fragments": 51,
                "total_fragments": 755,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.50",
                "min_intra_species_ani": "95.50",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 2331098.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Apibacter",
        "mensalis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}