{ "type": "genome", "identifier": "GCF_900019265.1", "organism": "Paraburkholderia ribeironis", "title": "Paraburkholderia ribeironis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "IRD", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900019265.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3512853", "wgs_master": "CYGX00000000.2", "refseq_category": "reference genome", "taxid": "1247936", "species_taxid": "1247936", "organism_name": "Paraburkholderia ribeironis", "infraspecific_name": "strain=STM 7296", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/01/23", "asm_name": "BN2475-7296", "asm_submitter": "IRD", "gbrs_paired_asm": "GCA_900019265.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/019/265/GCF_900019265.1_BN2475-7296", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7279154", "genome_size_ungapped": "7278634", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "228", "contig_count": "228", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900019265.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "6652", "protein_coding_gene_count": "6243", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-01-23", "dateModified": "2017-01-23", "datePublished": "2017-01-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraburkholderia ribeironis" ], "sample_taxid": [ "1247936" ], "sample_host_organism": [ "Piptadenia gonoacantha" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil" ], "sample_host_location_id": [], "data_size": "2.035 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7279154", "Number of Sequences": "228", "Longest Sequences (bp)": "281619", "N50 (bp)": "113721", "Gap Ratio (%)": "0.007377", "GCcontent (%)": "62.5", "Number of CDSs": "6426", "Average Protein Length": "310.0", "Coding Ratio (%)": "82.1", "Number of rRNAs": "2", "Number of tRNAs": "61", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraburkholderia ribeironis", "strain": "strain=STM 7296", "accession": "GCA_900019265.2", "taxid": 1247936, "species_taxid": 1247936, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2314, "total_fragments": 2323, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paraburkholderia ultramafica", "strain": "strain=LMG 28614", "accession": "GCA_902859915.1", "taxid": 1544867, "species_taxid": 1544867, "relation_to_type": "type", "validated": true, "ani": 89.1632, "matched_fragments": 1536, "total_fragments": 2323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia ginsengisoli", "strain": "strain=NBRC 100965", "accession": "GCA_000739735.1", "taxid": 311231, "species_taxid": 311231, "relation_to_type": "type", "validated": true, "ani": 88.2411, "matched_fragments": 1492, "total_fragments": 2323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia panacisoli", "strain": "strain=DCY113", "accession": "GCA_008369935.1", "taxid": 2603818, "species_taxid": 2603818, "relation_to_type": "type", "validated": true, "ani": 88.0524, "matched_fragments": 1605, "total_fragments": 2323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia fynbosensis", "strain": "strain=LMG 27177", "accession": "GCA_902859935.1", "taxid": 1200993, "species_taxid": 1200993, "relation_to_type": "type", "validated": true, "ani": 87.8013, "matched_fragments": 1509, "total_fragments": 2323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia xenovorans", "strain": "strain=LB400", "accession": "GCA_000013645.1", "taxid": 36873, "species_taxid": 36873, "relation_to_type": "type", "validated": true, "ani": 86.6303, "matched_fragments": 1424, "total_fragments": 2323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia phytofirmans", "strain": "strain=PsJN", "accession": "GCA_000020125.1", "taxid": 261302, "species_taxid": 261302, "relation_to_type": "type", "validated": true, "ani": 86.5543, "matched_fragments": 1426, "total_fragments": 2323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia dipogonis", "strain": "strain=ICMP 19430", "accession": "GCA_004402975.1", "taxid": 1211383, "species_taxid": 1211383, "relation_to_type": "type", "validated": true, "ani": 86.4904, "matched_fragments": 1489, "total_fragments": 2323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia aromaticivorans", "strain": "strain=BN5", "accession": "GCA_002278075.1", "taxid": 2026199, "species_taxid": 2026199, "relation_to_type": "type", "validated": true, "ani": 86.4639, "matched_fragments": 1465, "total_fragments": 2323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia bryophila", "strain": "strain=LMG 23644", "accession": "GCA_003269035.1", "taxid": 420952, "species_taxid": 420952, "relation_to_type": "type", "validated": true, "ani": 86.2168, "matched_fragments": 1374, "total_fragments": 2323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia nemoris", "strain": "strain=LMG 31836", "accession": "GCA_905221015.1", "taxid": 2793076, "species_taxid": 2793076, "relation_to_type": "type", "validated": true, "ani": 85.9174, "matched_fragments": 1452, "total_fragments": 2323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia domus", "strain": "strain=LMG 31832", "accession": "GCA_905220705.1", "taxid": 2793075, "species_taxid": 2793075, "relation_to_type": "type", "validated": true, "ani": 85.8232, "matched_fragments": 1423, "total_fragments": 2323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia haematera", "strain": "strain=LMG 31837", "accession": "GCA_905220975.1", "taxid": 2793077, "species_taxid": 2793077, "relation_to_type": "type", "validated": true, "ani": 85.754, "matched_fragments": 1386, "total_fragments": 2323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia podalyriae", "strain": "strain=WC7.3b", "accession": "GCA_014397785.1", "taxid": 1938811, "species_taxid": 1938811, "relation_to_type": "type", "validated": true, "ani": 85.4049, "matched_fragments": 1454, "total_fragments": 2323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia sprentiae", "strain": "strain=WSM5005", "accession": "GCA_000473465.1", "taxid": 948107, "species_taxid": 948107, "relation_to_type": "type", "validated": true, "ani": 85.1134, "matched_fragments": 1422, "total_fragments": 2323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia graminis", "strain": "strain=LMG 18924", "accession": "GCA_902859785.1", "taxid": 60548, "species_taxid": 60548, "relation_to_type": "type", "validated": true, "ani": 85.1068, "matched_fragments": 1345, "total_fragments": 2323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia graminis", "strain": "strain=C4D1M", "accession": "GCA_000172415.1", "taxid": 60548, "species_taxid": 60548, "relation_to_type": "type", "validated": true, "ani": 85.0071, "matched_fragments": 1328, "total_fragments": 2323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia kirstenboschensis", "strain": "strain=KB15", "accession": "GCA_001636975.1", "taxid": 1245436, "species_taxid": 1245436, "relation_to_type": "type", "validated": true, "ani": 84.34, "matched_fragments": 1121, "total_fragments": 2323, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900019265.1", "gtdb_species": "s__Paraburkholderia ribeironis", "ani": 100.0, "matched_fragments": 2314, "total_fragments": 2323, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, 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