{ "type": "genome", "identifier": "GCF_900021165.1", "organism": "Paenibacillus phocaensis", "title": "Paenibacillus phocaensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900021165.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3858979", "wgs_master": "FCOQ00000000.1", "refseq_category": "reference genome", "taxid": "1776378", "species_taxid": "1776378", "organism_name": "Paenibacillus phocaensis", "infraspecific_name": "strain=mt24", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/01/29", "asm_name": "Paenibacillus phoceensis", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_900021165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/021/165/GCF_900021165.1_Paenibacillus_phoceensis", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5515107", "genome_size_ungapped": "5515107", "gc_percent": "53.500000", "replicon_count": "0", "scaffold_count": "39", "contig_count": "39", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900021165.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "5034", "protein_coding_gene_count": "4877", "non_coding_gene_count": "94", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-01-29", "dateModified": "2016-01-29", "datePublished": "2016-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus phocaensis" ], "sample_taxid": [ "1776378" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.566 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5515107", "Number of Sequences": "39", "Longest Sequences (bp)": "962493", "N50 (bp)": "218069", "Gap Ratio (%)": "0.001632", "GCcontent (%)": "53.5", "Number of CDSs": "5020", "Average Protein Length": "316.9", "Coding Ratio (%)": "86.5", "Number of rRNAs": "11", "Number of tRNAs": "78", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus phocaensis", "strain": "strain=mt24", "accession": "GCA_900021165.1", "taxid": 1776378, "species_taxid": 1776378, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1818, "total_fragments": 1819, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paenibacillus timonensis", "strain": "strain=DSM 16943", "accession": "GCA_022427145.1", "taxid": 225915, "species_taxid": 225915, "relation_to_type": "type", "validated": true, "ani": 87.058, "matched_fragments": 1237, "total_fragments": 1819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus rubinfantis", "strain": "strain=MT18", "accession": "GCA_001486505.1", "taxid": 1720296, "species_taxid": 1720296, "relation_to_type": "type", "validated": true, "ani": 85.457, "matched_fragments": 1272, "total_fragments": 1819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus barengoltzii", "strain": "strain=NBRC 101215", "accession": "GCA_004000745.1", "taxid": 343517, "species_taxid": 343517, "relation_to_type": "type", "validated": true, "ani": 83.1715, "matched_fragments": 1073, "total_fragments": 1819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus oralis", "strain": "strain=KCOM 3021", "accession": "GCA_003863965.1", "taxid": 2490856, "species_taxid": 2490856, "relation_to_type": "type", "validated": true, "ani": 80.4295, "matched_fragments": 866, "total_fragments": 1819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus macerans", "strain": "strain=ATCC 8244", "accession": "GCA_000746875.1", "taxid": 44252, "species_taxid": 44252, "relation_to_type": "type", "validated": true, "ani": 80.4081, "matched_fragments": 834, "total_fragments": 1819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus caui", "strain": "strain=81-11", "accession": "GCA_019904135.1", "taxid": 2873927, "species_taxid": 2873927, "relation_to_type": "type", "validated": true, "ani": 77.6874, "matched_fragments": 234, "total_fragments": 1819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus uliginis", "strain": "strain=N3/975", "accession": "GCA_900177425.1", "taxid": 683737, "species_taxid": 683737, "relation_to_type": "type", "validated": true, "ani": 77.3969, "matched_fragments": 136, "total_fragments": 1819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus herberti", "strain": "strain=R33", "accession": "GCA_002233675.1", "taxid": 1619309, "species_taxid": 1619309, "relation_to_type": "type", "validated": true, "ani": 77.2408, "matched_fragments": 80, "total_fragments": 1819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus darwinianus", "strain": "strain=Br", "accession": "GCA_000598065.1", "taxid": 1380763, "species_taxid": 1380763, "relation_to_type": "type", "validated": true, "ani": 77.1789, "matched_fragments": 114, "total_fragments": 1819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus albicereus", "strain": "strain=UniB2", "accession": "GCA_012676905.1", "taxid": 2726185, 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