{ "type": "genome", "identifier": "GCF_900046455.1", "organism": "Cellulomonas timonensis", "title": "Cellulomonas timonensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900046455.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3857552", "wgs_master": "FCOT00000000.1", "refseq_category": "reference genome", "taxid": "1689271", "species_taxid": "1689271", "organism_name": "Cellulomonas timonensis", "infraspecific_name": "strain=SN7", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/01/29", "asm_name": "Cellulomonas timonensis", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_900046455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/046/455/GCF_900046455.1_Cellulomonas_timonensis", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4057828", "genome_size_ungapped": "4057828", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "13", "contig_count": "13", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900046455.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3735", "protein_coding_gene_count": "3620", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-01-29", "dateModified": "2016-01-29", "datePublished": "2016-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Cellulomonas timonensis" ], "sample_taxid": [ "1689271" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.076 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4057828", "Number of Sequences": "13", "Longest Sequences (bp)": "1105090", "N50 (bp)": "1097545", "Gap Ratio (%)": "0.000049", "GCcontent (%)": "72.4", "Number of CDSs": "3693", "Average Protein Length": "334.7", "Coding Ratio (%)": "91.4", "Number of rRNAs": "15", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cellulomonas timonensis", "strain": "strain=SN7", "accession": "GCA_900046455.1", "taxid": 1689271, "species_taxid": 1689271, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1335, "total_fragments": 1346, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cellulomonas cellasea", "strain": "strain=NBRC 3753", "accession": "GCA_006538745.1", "taxid": 43670, "species_taxid": 43670, "relation_to_type": "type", "validated": true, "ani": 81.1276, "matched_fragments": 750, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas cellasea", "strain": "strain=DSM 20118", "accession": "GCA_000767135.1", "taxid": 43670, "species_taxid": 43670, "relation_to_type": "type", "validated": true, "ani": 81.0564, "matched_fragments": 621, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas biazotea", "strain": "strain=NBRC12680", "accession": "GCA_004306155.1", "taxid": 1709, "species_taxid": 1709, "relation_to_type": "type", "validated": true, "ani": 80.774, "matched_fragments": 610, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas soli", "strain": "strain=DSM 24484", "accession": "GCA_013409305.1", "taxid": 931535, "species_taxid": 931535, "relation_to_type": "type", "validated": true, "ani": 80.5624, "matched_fragments": 662, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas rhizosphaerae", "strain": "strain=NEAU-TCZ24", "accession": "GCA_003470205.1", "taxid": 2293719, "species_taxid": 2293719, "relation_to_type": "type", "validated": true, "ani": 80.4482, "matched_fragments": 557, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas hominis", "strain": "strain=DSM 9581", "accession": "GCA_014201095.1", "taxid": 156981, "species_taxid": 156981, "relation_to_type": "suspected-type", "validated": true, "ani": 80.3777, "matched_fragments": 685, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas hominis", "strain": "strain=NBRC 16055", "accession": "GCA_007989225.1", "taxid": 156981, "species_taxid": 156981, "relation_to_type": "suspected-type", "validated": true, "ani": 80.2894, "matched_fragments": 658, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas humilata", "strain": "strain=ATCC 25174", "accession": "GCA_013359775.1", "taxid": 144055, "species_taxid": 144055, "relation_to_type": "type", "validated": true, "ani": 80.2742, "matched_fragments": 656, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas xylanilytica", "strain": "strain=NBRC 101102", "accession": "GCA_007989805.1", "taxid": 233583, "species_taxid": 233583, "relation_to_type": "type", "validated": true, "ani": 80.2616, "matched_fragments": 654, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas palmilytica", "strain": "strain=EW123", "accession": "GCA_021590045.1", "taxid": 2608402, 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"validated": true, "ani": 79.7398, "matched_fragments": 525, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas denverensis", "strain": "strain=ATCC BAA-788", "accession": "GCA_012396125.1", "taxid": 264297, "species_taxid": 264297, "relation_to_type": "type", "validated": true, "ani": 79.4957, "matched_fragments": 569, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea subterranea", "strain": "strain=HO-Ch2", "accession": "GCA_008364845.1", "taxid": 2607497, "species_taxid": 2607497, "relation_to_type": "type", "validated": true, "ani": 79.3885, "matched_fragments": 562, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": true, "ani": 79.1898, "matched_fragments": 599, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium funkei", "strain": "strain=NBRC 104118", "accession": "GCA_001570825.1", "taxid": 264251, "species_taxid": 264251, "relation_to_type": "suspected-type", "validated": true, "ani": 79.1219, "matched_fragments": 563, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium funkei", "strain": "strain=JCM 14302", "accession": "GCA_004519295.1", "taxid": 264251, "species_taxid": 264251, "relation_to_type": "suspected-type", "validated": true, "ani": 79.0498, "matched_fragments": 577, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Promicromonospora citrea", "strain": "strain=ATCC 15908", "accession": "GCA_013004695.1", "taxid": 43677, "species_taxid": 43677, "relation_to_type": "type", "validated": true, "ani": 78.5084, "matched_fragments": 509, 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