{ "type": "genome", "identifier": "GCF_900060185.1", "organism": "Grimontia marina", "title": "Grimontia marina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UVEG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900060185.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3872803", "wgs_master": "FIZY00000000.1", "refseq_category": "reference genome", "taxid": "646534", "species_taxid": "646534", "organism_name": "Grimontia marina", "infraspecific_name": "strain=CECT 8713", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/03/04", "asm_name": "GmarinaCECT8713_SPAdes_Prokka", "asm_submitter": "UVEG", "gbrs_paired_asm": "GCA_900060185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/060/185/GCF_900060185.1_GmarinaCECT8713_SPAdes_Prokka", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5690703", "genome_size_ungapped": "5690703", "gc_percent": "48.000000", "replicon_count": "0", "scaffold_count": "294", "contig_count": "294", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900060185.1-RS_2024_08_01", "annotation_date": "2024-08-01", "total_gene_count": "5384", "protein_coding_gene_count": "5065", "non_coding_gene_count": "135", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-03-04", "dateModified": "2016-03-04", "datePublished": "2016-03-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Grimontia marina" ], "sample_taxid": [ "646534" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.627 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.08, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5690703", "Number of Sequences": "294", "Longest Sequences (bp)": "351238", "N50 (bp)": "81917", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "48.2", "Number of CDSs": "4999", "Average Protein Length": "315.0", "Coding Ratio (%)": "83.0", "Number of rRNAs": "11", "Number of tRNAs": "101", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Grimontia marina", "strain": "strain=CECT 8713", "accession": "GCA_900060185.1", "taxid": 646534, "species_taxid": 646534, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1773, "total_fragments": 1777, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Grimontia indica", "strain": "strain=AK16", "accession": "GCA_000333895.2", "taxid": 1056512, "species_taxid": 1056512, "relation_to_type": "type", "validated": true, "ani": 90.3385, "matched_fragments": 1359, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Grimontia sedimenti", "strain": "strain=S25", "accession": "GCA_011045095.1", "taxid": 2711294, "species_taxid": 2711294, "relation_to_type": "type", "validated": true, "ani": 89.7668, "matched_fragments": 1284, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Grimontia celer", "strain": "strain=CECT 9029", "accession": "GCA_900055185.1", "taxid": 1796497, "species_taxid": 1796497, "relation_to_type": "type", "validated": true, "ani": 88.8178, "matched_fragments": 1353, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Grimontia hollisae", "strain": "strain=CIP 101886", "accession": "GCA_000176515.1", "taxid": 673, "species_taxid": 673, "relation_to_type": "type", "validated": true, "ani": 81.6856, "matched_fragments": 749, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photobacterium galatheae", "strain": "strain=DSM 100496", "accession": "GCA_023653475.1", "taxid": 1654360, "species_taxid": 1654360, "relation_to_type": "type", "validated": true, "ani": 78.4529, "matched_fragments": 171, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio fortis", "strain": "strain=LMG 21557", "accession": "GCA_024347475.1", "taxid": 212667, "species_taxid": 212667, "relation_to_type": "type", "validated": true, "ani": 78.0562, "matched_fragments": 158, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio stylophorae", "strain": "strain=CECT 7929", "accession": "GCA_921293875.1", 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Grimontia", "marina" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }