{ "type": "genome", "identifier": "GCF_900065875.1", "organism": "Prevotella phocaeensis", "title": "Prevotella phocaeensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900065875.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3869493", "wgs_master": "FIZG00000000.1", "refseq_category": "reference genome", "taxid": "1776388", "species_taxid": "1776388", "organism_name": "Prevotella phocaeensis", "infraspecific_name": "strain=SN19", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/19", "asm_name": "PRJEB126981", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_900065875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/065/875/GCF_900065875.1_PRJEB126981", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2922118", "genome_size_ungapped": "2921710", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "13", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900065875.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "2396", "protein_coding_gene_count": "2288", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-19", "dateModified": "2016-02-19", "datePublished": "2016-02-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella phocaeensis" ], "sample_taxid": [ "1776388" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.832 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2922118", "Number of Sequences": "12", "Longest Sequences (bp)": "908140", "N50 (bp)": "291208", "Gap Ratio (%)": "0.013997", "GCcontent (%)": "44.6", "Number of CDSs": "2305", "Average Protein Length": "366.6", "Coding Ratio (%)": "86.7", "Number of rRNAs": "7", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella phocaeensis", "strain": "strain=SN19", "accession": "GCA_900065875.1", "taxid": 1776388, "species_taxid": 1776388, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 969, "total_fragments": 969, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Prevotella oralis", "strain": "strain=DSM 20702", "accession": "GCA_900129435.1", "taxid": 28134, "species_taxid": 28134, "relation_to_type": "type", "validated": true, "ani": 97.1633, "matched_fragments": 866, "total_fragments": 969, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Prevotella oralis", "strain": "strain=ATCC 33269", "accession": "GCA_000185145.2", "taxid": 28134, "species_taxid": 28134, "relation_to_type": "type", "validated": true, "ani": 97.1592, "matched_fragments": 869, "total_fragments": 969, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Prevotella oris", "strain": "strain=NCTC13071", "accession": "GCA_900637655.1", "taxid": 28135, "species_taxid": 28135, "relation_to_type": "type", "validated": true, "ani": 79.2439, "matched_fragments": 101, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella illustrans", "strain": "strain=A2931", "accession": "GCA_017426725.1", "taxid": 2800387, "species_taxid": 2800387, "relation_to_type": "type", "validated": true, "ani": 79.0557, "matched_fragments": 91, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella timonensis", "strain": "strain=4401737", "accession": "GCA_000455445.1", "taxid": 386414, "species_taxid": 386414, "relation_to_type": "type", "validated": true, "ani": 78.539, "matched_fragments": 83, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella oris", "strain": "strain=DSM 18711", "accession": "GCA_000377685.1", "taxid": 28135, "species_taxid": 28135, "relation_to_type": "type", "validated": true, "ani": 78.4929, "matched_fragments": 96, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella timonensis", "strain": "strain=DSM 22865", "accession": "GCA_000430565.1", "taxid": 386414, "species_taxid": 386414, "relation_to_type": "suspected-type", 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"total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000185145.2", "gtdb_species": "s__Prevotella oralis", "ani": 97.1853, "matched_fragments": 868, "total_fragments": 969, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.83", "min_intra_species_ani": "97.13", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCF_003043925.1", "gtdb_species": "s__Prevotella sp003043925", "ani": 79.9463, "matched_fragments": 91, "total_fragments": 969, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", 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