{ "type": "genome", "identifier": "GCF_900067705.2", "organism": "Nocardioides massiliensis", "title": "Nocardioides massiliensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900067705.2", "bioproject": "PRJNA224116", "biosample": "SAMEA2769925", "wgs_master": "CCXJ00000000.1", "refseq_category": "na", "taxid": "1325935", "species_taxid": "1325935", "organism_name": "Nocardioides massiliensis", "infraspecific_name": "strain=GD13", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/14", "asm_name": "Nocardioides massiliensis str. GD13", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_900067705.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/067/705/GCF_900067705.2_Nocardioides_massiliensis_str._GD13", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4003863", "genome_size_ungapped": "4003863", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "840", "contig_count": "840", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900067705.2-RS_2024_07_31", "annotation_date": "2024-07-31", "total_gene_count": "4426", "protein_coding_gene_count": "4137", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-14", "dateModified": "2016-11-14", "datePublished": "2016-11-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides massiliensis" ], "sample_taxid": [ "1325935" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.077 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4003863", "Number of Sequences": "840", "Longest Sequences (bp)": "36816", "N50 (bp)": "7570", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.0", "Number of CDSs": "3292", "Average Protein Length": "290.2", "Coding Ratio (%)": "71.6", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides massiliensis", "strain": "strain=GD13", "accession": "GCA_900067705.2", "taxid": 1325935, "species_taxid": 1325935, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 912, "total_fragments": 931, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardioides dongkuii", "strain": "strain=S-713", "accession": "GCA_014127485.1", "taxid": 2760089, "species_taxid": 2760089, "relation_to_type": "type", "validated": true, "ani": 80.5004, "matched_fragments": 461, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ferulae", "strain": "strain=SZ4R5S7", "accession": "GCA_003660455.1", "taxid": 2340821, "species_taxid": 2340821, "relation_to_type": "type", "validated": true, "ani": 80.4093, "matched_fragments": 487, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides iriomotensis", "strain": "strain=NBRC 105384", "accession": "GCA_004168035.1", "taxid": 715784, "species_taxid": 715784, "relation_to_type": "type", "validated": true, "ani": 80.3994, "matched_fragments": 442, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ginsengisegetis", "strain": "strain=DSM 21349", "accession": "GCA_014138045.1", "taxid": 661491, "species_taxid": 661491, "relation_to_type": "type", "validated": true, "ani": 80.3504, "matched_fragments": 459, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides deserti", "strain": "strain=CGMCC 4.7183", "accession": "GCA_014646035.1", "taxid": 1588644, "species_taxid": 1588644, "relation_to_type": "type", "validated": true, "ani": 80.2145, "matched_fragments": 485, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ungokensis", "strain": "strain=LMG 28591", "accession": "GCA_013466985.1", "taxid": 1643322, "species_taxid": 1643322, "relation_to_type": "type", "validated": true, "ani": 80.2051, "matched_fragments": 411, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides deserti", "strain": "strain=SC8A-24", "accession": "GCA_014266025.1", "taxid": 1588644, "species_taxid": 1588644, "relation_to_type": "type", "validated": true, "ani": 80.2017, "matched_fragments": 488, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides dokdonensis", "strain": "strain=FR1436", "accession": "GCA_001653335.1", "taxid": 450734, "species_taxid": 450734, "relation_to_type": "type", "validated": true, "ani": 80.1716, "matched_fragments": 461, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides okcheonensis", "strain": "strain=MMS20-HV4-12", "accession": "GCA_020991065.1", "taxid": 2894081, "species_taxid": 2894081, "relation_to_type": "type", "validated": true, "ani": 80.1171, "matched_fragments": 423, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides kribbensis", "strain": "strain=DSM 16314", "accession": "GCA_015070375.1", "taxid": 305517, "species_taxid": 305517, "relation_to_type": "type", "validated": true, "ani": 80.0696, "matched_fragments": 451, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides guangzhouensis", "strain": "strain=130", "accession": "GCA_004519545.1", "taxid": 2497878, "species_taxid": 2497878, "relation_to_type": "type", "validated": true, "ani": 80.0121, "matched_fragments": 408, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides luti", "strain": "strain=KIGAM211", "accession": "GCA_014212315.1", "taxid": 2761101, "species_taxid": 2761101, "relation_to_type": "type", "validated": true, "ani": 80.0045, "matched_fragments": 463, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panaciterrulae", "strain": "strain=DSM 21350", "accession": "GCA_013409645.1", "taxid": 661492, "species_taxid": 661492, "relation_to_type": "type", "validated": true, "ani": 80.0, "matched_fragments": 435, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides donggukensis", "strain": "strain=MJB4", "accession": "GCA_014842875.1", "taxid": 2774019, "species_taxid": 2774019, "relation_to_type": "type", "validated": true, "ani": 79.9994, "matched_fragments": 388, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panacis", "strain": "strain=G188", "accession": "GCA_019039255.1", "taxid": 2849501, "species_taxid": 2849501, "relation_to_type": "type", "validated": true, "ani": 79.9864, "matched_fragments": 432, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": "GCA_900101465.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 79.9543, "matched_fragments": 470, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides soli", "strain": "strain=DSM 105498", "accession": "GCA_014191495.1", "taxid": 1036020, "species_taxid": 1036020, "relation_to_type": "type", "validated": true, "ani": 79.8512, "matched_fragments": 485, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides currus", "strain": "strain=IB-3", "accession": "GCA_003057875.1", "taxid": 2133958, "species_taxid": 2133958, "relation_to_type": "type", "validated": true, "ani": 79.8124, "matched_fragments": 397, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides 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