{ "type": "genome", "identifier": "GCF_900078205.2", "organism": "Chryseobacterium timonianum", "title": "Chryseobacterium timonianum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900078205.2", "bioproject": "PRJNA224116", "biosample": "SAMEA3904576", "wgs_master": "FJVD00000000.1", "refseq_category": "reference genome", "taxid": "1805473", "species_taxid": "1805473", "organism_name": "Chryseobacterium timonianum", "infraspecific_name": "strain=G972", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/03/22", "asm_name": "PRJEB13113", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_900078205.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/078/205/GCF_900078205.2_PRJEB13113", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5390133", "genome_size_ungapped": "5390040", "gc_percent": "35.500000", "replicon_count": "0", "scaffold_count": "7", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900078205.2-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "4915", "protein_coding_gene_count": "4798", "non_coding_gene_count": "92", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-03-22", "dateModified": "2016-03-22", "datePublished": "2016-03-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium timonianum" ], "sample_taxid": [ "1805473" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.502 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5390133", "Number of Sequences": "7", "Longest Sequences (bp)": "3719575", "N50 (bp)": "3719575", "Gap Ratio (%)": "0.001744", "GCcontent (%)": "35.5", "Number of CDSs": "4737", "Average Protein Length": "327.2", "Coding Ratio (%)": "86.3", "Number of rRNAs": "4", "Number of tRNAs": "82", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium nakagawai", "strain": "strain=NCTC13529", "accession": "GCA_900637665.1", "taxid": 1241982, "species_taxid": 1241982, "relation_to_type": "type", "validated": true, "ani": 87.6924, "matched_fragments": 1403, "total_fragments": 1792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium jejuense", "strain": "strain=DSM 19299", "accession": "GCA_900100075.1", "taxid": 445960, "species_taxid": 445960, "relation_to_type": "type", "validated": true, "ani": 87.4957, "matched_fragments": 1414, "total_fragments": 1792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium contaminans", "strain": "strain=C-26", "accession": "GCA_001684955.1", "taxid": 1423959, "species_taxid": 1423959, "relation_to_type": "type", "validated": true, "ani": 87.3934, "matched_fragments": 1164, "total_fragments": 1792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium contaminans", "strain": "strain=DSM 27621", "accession": "GCA_900142615.1", "taxid": 1423959, "species_taxid": 1423959, "relation_to_type": "type", "validated": true, "ani": 87.2697, "matched_fragments": 1300, "total_fragments": 1792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium pennae", "strain": "strain=1_F178", "accession": "GCA_003385515.1", "taxid": 2258962, "species_taxid": 2258962, "relation_to_type": "type", "validated": true, "ani": 86.9221, "matched_fragments": 1365, "total_fragments": 1792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ureilyticum", "strain": "strain=DSM 18017", "accession": "GCA_900156735.1", "taxid": 373668, "species_taxid": 373668, "relation_to_type": "type", "validated": true, "ani": 84.5452, "matched_fragments": 1203, "total_fragments": 1792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium artocarpi", "strain": "strain=UTM-3", "accession": "GCA_001684975.1", "taxid": 1414727, "species_taxid": 1414727, "relation_to_type": "type", "validated": true, "ani": 84.3173, "matched_fragments": 1190, "total_fragments": 1792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium 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