{ "type": "genome", "identifier": "GCF_900078665.2", "organism": "Mycolicibacterium houstonense", "title": "Mycolicibacterium houstonense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900078665.2", "bioproject": "PRJNA224116", "biosample": "SAMEA3913388", "wgs_master": "FJVO00000000.1", "refseq_category": "na", "taxid": "146021", "species_taxid": "146021", "organism_name": "Mycolicibacterium houstonense", "infraspecific_name": "strain=ATCC 49403T", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/04/02", "asm_name": "PRJEB13221", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_900078665.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/078/665/GCF_900078665.2_PRJEB13221", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6451811", "genome_size_ungapped": "6383932", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "197", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900078665.2-RS_2024_07_07", "annotation_date": "2024-07-07", "total_gene_count": "6576", "protein_coding_gene_count": "5899", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-04-02", "dateModified": "2016-04-02", "datePublished": "2016-04-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycolicibacterium houstonense" ], "sample_taxid": [ "146021" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.737 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6451811", "Number of Sequences": "27", "Longest Sequences (bp)": "5525743", "N50 (bp)": "5525743", "Gap Ratio (%)": "1.061562", "GCcontent (%)": "67.0", "Number of CDSs": "6360", "Average Protein Length": "301.8", "Coding Ratio (%)": "89.2", "Number of rRNAs": "6", "Number of tRNAs": "64", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycolicibacterium houstonense", "strain": "strain=type strain: ATCC 49403", "accession": "GCA_900078665.2", "taxid": 146021, "species_taxid": 146021, "relation_to_type": "type", "validated": true, "ani": 99.9999, "matched_fragments": 2135, "total_fragments": 2139, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycolicibacterium neworleansense", "strain": "strain=type strain: ATCC 49404", "accession": "GCA_001245615.1", "taxid": 146018, "species_taxid": 146018, "relation_to_type": "type", "validated": true, "ani": 86.7441, "matched_fragments": 1707, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium boenickei", "strain": "strain=JCM 15653", "accession": "GCA_010731295.1", "taxid": 146017, "species_taxid": 146017, "relation_to_type": "type", "validated": true, "ani": 86.6352, "matched_fragments": 1652, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium septicum", "strain": "strain=ATCC 700731", "accession": "GCA_012396425.1", "taxid": 98668, "species_taxid": 98668, "relation_to_type": "type", "validated": true, "ani": 86.557, "matched_fragments": 1618, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium septicum", "strain": "strain=type strain: DSM 44393", "accession": "GCA_000455325.1", "taxid": 98668, "species_taxid": 98668, "relation_to_type": "type", "validated": true, "ani": 86.5427, "matched_fragments": 1638, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium conceptionense", "strain": "strain=CCUG 50187", "accession": "GCA_002102065.1", "taxid": 451644, "species_taxid": 451644, "relation_to_type": "suspected-type", "validated": true, "ani": 86.1546, "matched_fragments": 1578, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fortuitum subsp. fortuitum", "strain": "strain=DSM 46621", "accession": "GCA_000295855.1", "taxid": 144549, "species_taxid": 1766, "relation_to_type": "type", "validated": true, "ani": 86.0154, "matched_fragments": 1639, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fortuitum subsp. acetamidolyticum", "strain": "strain=JCM6368", "accession": "GCA_001570465.1", "taxid": 144550, "species_taxid": 1766, "relation_to_type": "type", "validated": true, "ani": 86.01, "matched_fragments": 1634, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fortuitum subsp. fortuitum", "strain": "strain=JCM 6387", "accession": "GCA_022179545.1", "taxid": 144549, "species_taxid": 1766, "relation_to_type": "type", "validated": true, "ani": 86.0056, "matched_fragments": 1646, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium setense", "strain": "strain=DSM 45070", "accession": "GCA_000805385.1", "taxid": 431269, "species_taxid": 431269, "relation_to_type": "type", "validated": true, "ani": 85.8809, "matched_fragments": 1619, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium alvei", "strain": "strain=JCM 12272", "accession": "GCA_010727325.1", "taxid": 67081, "species_taxid": 67081, "relation_to_type": "type", "validated": true, "ani": 85.5377, "matched_fragments": 1396, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium lutetiense", "strain": "strain=DSM 46713", "accession": "GCA_017876775.1", "taxid": 1641992, "species_taxid": 1641992, "relation_to_type": "type", "validated": true, "ani": 85.4892, "matched_fragments": 1467, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Mycobacterium] fortunisiensis", "strain": "strain=TNTM28", "accession": "GCA_019050325.1", "taxid": 2600579, "species_taxid": 2600579, "relation_to_type": "type", "validated": true, "ani": 85.3701, "matched_fragments": 1392, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium llatzerense", "strain": "strain=MG13", "accession": "GCA_025331195.1", "taxid": 280871, "species_taxid": 280871, "relation_to_type": "type", "validated": true, "ani": 80.3087, "matched_fragments": 938, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium pallens", "strain": "strain=JCM 16370", "accession": "GCA_019456675.1", "taxid": 370524, "species_taxid": 370524, "relation_to_type": "type", "validated": true, "ani": 79.8645, "matched_fragments": 879, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium vinylchloridicum", "strain": "strain=CECT 8761", "accession": "GCA_013404075.1", "taxid": 2736928, "species_taxid": 2736928, "relation_to_type": "type", "validated": true, "ani": 79.742, "matched_fragments": 864, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium crocinum", "strain": "strain=JCM 16369", "accession": "GCA_022370635.3", "taxid": 388459, "species_taxid": 388459, "relation_to_type": "type", "validated": true, "ani": 79.7131, "matched_fragments": 895, "total_fragments": 2139, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900078665.2", "gtdb_species": "s__Mycobacterium houstonense", "ani": 99.9999, "matched_fragments": 2135, "total_fragments": 2139, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001245615.1", "gtdb_species": "s__Mycobacterium neworleansense", "ani": 86.7418, 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