# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_3	LOCUS_00030	sequence01:1226..1813(-)	partial			WP_003402118.1	glycine oxidase ThiO	97.4	55.6	78.9
MGA_13	LOCUS_00110	sequence02:3677..4939(-)	partial			WP_003402100.1	serine/threonine protein kinase PknG	98.8	55.3	78.3
MGA_14	LOCUS_00120	sequence02:4979..5233(+)	partial			WP_005093305.1	SGNH/GDSL hydrolase family protein	85.7	27.8	50.0
MGA_25	LOCUS_00230	sequence02:17629..17847(-)	partial			WP_003902196.1	hypothetical protein	100.0	62.6	50.0
MGA_26	LOCUS_00240	sequence02:17930..18124(+)	partial			WP_003407710.1	Rv1535 family protein	82.8	67.9	49.1
MGA_44	LOCUS_00420	sequence02:35183..35527(+)	frameshift		35223	WP_011728162.1	chorismate mutase	85.1	53.6	49.5
MGA_47	LOCUS_00450	sequence02:37165..37956(-)	frameshift		38036	WP_003402217.1	molybdopterin molybdotransferase MoeA	99.6	64.0	67.3
MGA_48	LOCUS_00460	sequence02:38022..38387(-)	frameshift		38036	WP_014876895.1	molybdopterin molybdotransferase MoeA	96.7	29.6	72.6
MGA_52	LOCUS_00500	sequence02:41519..42409(-)	partial			WP_011727251.1	DEAD/DEAH box helicase	98.3	51.9	73.6
MGA_53	LOCUS_00510	sequence02:42297..43400(-)	partial			WP_011727251.1	DEAD/DEAH box helicase	70.8	45.8	84.6
MGA_58	LOCUS_00560	sequence02:48044..48322(+)	partial			WP_003403137.1	type II toxin-antitoxin system VapC family toxin	82.6	55.5	43.4
MGA_61	LOCUS_00590	sequence02:50098..50307(+)	partial			WP_011728772.1	hypothetical protein	76.8	67.1	56.6
MGA_65	LOCUS_00620	sequence02:53018..53227(+)	partial			WP_011728772.1	hypothetical protein	76.8	67.1	54.7
MGA_77	LOCUS_00740	sequence02:65176..65385(-)	partial			WP_003408465.1	type II toxin-antitoxin system VapC family toxin	85.5	45.7	42.4
MGA_78	LOCUS_00750	sequence02:65405..65920(-)	frameshift		65931	WP_005112213.1	prolyl oligopeptidase family serine peptidase	97.1	24.6	84.9
MGA_79	LOCUS_00760	sequence02:65818..67404(-)	frameshift		65931	WP_003402292.1	prolyl oligopeptidase family protein	92.6	72.5	72.9
MGA_83	LOCUS_00800	sequence02:69709..70242(+)	partial			WP_003402299.1	hypothetical protein	63.8	64.9	46.9
MGA_104	LOCUS_01010	sequence02:86625..87785(+)	partial			WP_010950435.1	DUF4226 domain-containing protein	51.8	71.3	37.5
MGA_106	LOCUS_01030	sequence02:88290..89057(-)	partial			WP_003898475.1	DUF2993 domain-containing protein	92.5	66.7	51.7
MGA_123	LOCUS_01200	sequence02:103037..110104(+)	partial			WP_011142823.1	type I polyketide synthase	39.0	76.3	51.9
MGA_124	LOCUS_01210	sequence02:110101..115467(+)	partial			WP_011205656.1	non-ribosomal peptide synthetase	58.6	32.6	41.4
MGA_126	LOCUS_01230	sequence02:116471..116647(-)	partial			WP_003405897.1	HNH endonuclease signature motif containing protein	67.2	8.6	53.8
MGA_129	LOCUS_01250	sequence02:118206..120377(-)	partial			WP_013224247.1	cellulase family glycosylhydrolase	41.4	55.6	28.4
MGA_131	LOCUS_01270	sequence02:121070..121348(+)	partial			WP_003402715.1	hypothetical protein	68.5	63.6	46.0
MGA_133	LOCUS_01290	sequence02:123507..123815(+)	partial			WP_005089627.1	hypothetical protein	34.3	31.8	80.0
MGA_138	LOCUS_01340	sequence02:128318..129214(-)	frameshift,internal_stop_codon	128318..128320(-),128255..128257(-)	128251,128107	WP_005113275.1	PPE family protein	99.0	59.5	38.0
MGA_139	LOCUS_01350	sequence02:129349..130551(-)	partial			WP_003243554.1	cupin domain-containing protein	60.0	77.3	25.2
MGA_149	LOCUS_01450	sequence02:138678..138827(-)	partial			WP_003402851.1	hypothetical protein	67.3	67.9	75.0
MGA_150	LOCUS_01460	sequence02:138898..139200(+)	partial			WP_003402853.1	DUF4229 domain-containing protein	70.0	66.7	50.0
MGA_158	LOCUS_01540	sequence02:145875..147698(+)	partial			WP_003911223.1	hypothetical protein	23.4	27.0	45.0
MGA_174	LOCUS_01700	sequence02:159129..159998(+)	partial			WP_011087945.1	IS701-like element ISBj9 family transposase	92.0	54.5	34.9
MGA_175	LOCUS_01710	sequence02:160427..161173(+)	partial			WP_005112902.1	hypothetical protein	73.4	17.3	36.2
MGA_202	LOCUS_01980	sequence02:186554..186781(+)	frameshift,internal_stop_codon	187017..187019(+)	186772	WP_011730327.1	DUF309 domain-containing protein	90.7	40.9	67.6
MGA_203	LOCUS_01990	sequence02:186795..187019(+)	frameshift,internal_stop_codon	187017..187019(+)	186772	WP_011730327.1	DUF309 domain-containing protein	98.6	44.5	46.6
MGA_213	LOCUS_02090	sequence02:195326..196606(-)	partial			WP_010950435.1	DUF4226 domain-containing protein	27.0	40.8	49.6
MGA_215	LOCUS_02110	sequence02:197755..198654(-)	partial			WP_010921324.1	class I SAM-dependent methyltransferase	65.9	72.5	43.8
MGA_217	LOCUS_02130	sequence02:200277..200639(-)	partial			WP_015775835.1	DoxX family protein	67.5	64.5	46.9
MGA_238	LOCUS_02340	sequence02:219523..219795(-)	partial			WP_003403731.1	sigma-70 family RNA polymerase sigma factor SigL	96.7	55.9	45.5
MGA_241	LOCUS_02370	sequence02:221016..221366(+)	internal_stop_codon	221364..221366(+)		WP_020677315.1	DEAD/DEAH box helicase family protein	86.2	10.5	37.6
MGA_242	LOCUS_02380	sequence02:221499..224090(+)	internal_stop_codon	221364..221366(+)		WP_020677315.1	DEAD/DEAH box helicase family protein	95.8	80.4	42.3
MGA_244	LOCUS_02400	sequence02:226971..227435(+)	frameshift		227402	WP_029104457.1	ABC-F family ATP-binding cassette domain-containing protein	96.1	26.8	73.2
MGA_245	LOCUS_02410	sequence02:227417..228556(+)	frameshift		227402	WP_005082715.1	ABC-F family ATP-binding cassette domain-containing protein	99.7	68.5	90.7
MGA_260	LOCUS_02560	sequence02:248956..250851(-)	frameshift		250949	WP_003900193.1	exodeoxyribonuclease V subunit gamma	99.4	57.2	64.3
MGA_261	LOCUS_02570	sequence02:250743..252281(-)	frameshift		250949	WP_003900193.1	exodeoxyribonuclease V subunit gamma	90.4	42.8	67.2
MGA_270	LOCUS_02660	sequence02:259273..259548(-)	partial			WP_003408271.1	protein disulfide oxidoreductase	96.7	48.4	54.5
MGA_288	LOCUS_02840	sequence02:272687..275374(+)	partial			WP_011727624.1	NEW3 domain-containing protein	93.5	60.4	68.3
MGA_289	LOCUS_02850	sequence02:275314..276267(+)	partial			WP_003910172.1	NEW3 domain-containing protein	97.2	26.4	52.6
MGA_306	LOCUS_03020	sequence02:296553..297017(+)	partial			WP_003403451.1	TetR/AcrR family transcriptional regulator	79.9	62.8	83.7
MGA_321	LOCUS_03170	sequence02:310365..311216(-)	partial			WP_003405603.1	nucleotidyl transferase AbiEii/AbiGii toxin family protein	59.4	66.9	81.0
MGA_322	LOCUS_03180	sequence02:311213..311770(-)	partial			WP_026312796.1	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	77.8	69.9	37.0
MGA_335	LOCUS_03310	sequence02:321711..322286(+)	partial			WP_176742140.1	amidohydrolase family protein	82.7	48.0	49.4
MGA_345	LOCUS_03410	sequence02:329169..330002(-)	partial			WP_003900223.1	resuscitation-promoting factor protein RpfA	52.0	35.6	69.7
MGA_358	LOCUS_03540	sequence02:341238..341513(+)	partial			WP_003404614.1	DUF2537 domain-containing protein	67.0	64.9	63.9
MGA_368	LOCUS_03640	sequence02:351528..352028(+)	internal_stop_codon	352026..352028(+)		WP_003404684.1	peptidoglycan-binding protein ArfA	97.0	53.4	32.8
MGA_370	LOCUS_03660	sequence02:352333..353130(+)	frameshift		352331	WP_003404684.1	peptidoglycan-binding protein ArfA	100.0	76.7	42.3
MGA_372	LOCUS_03680	sequence02:353295..354008(+)	partial			WP_003404688.1	membrane protein	29.5	40.0	54.3
MGA_390	LOCUS_03860	sequence02:373578..375575(+)	partial			WP_013224715.1	hypothetical protein	50.7	78.0	25.7
MGA_394	LOCUS_03900	sequence02:380660..380836(+)	partial			WP_011731395.1	nuclear transport factor 2 family protein	98.3	43.5	57.9
MGA_412	LOCUS_04080	sequence02:401889..403121(+)	partial			WP_003901256.1	PPE family protein	84.6	53.4	42.6
MGA_419	LOCUS_04150	sequence02:408776..409732(+)	partial			WP_003114566.1	oxidoreductase	66.4	68.3	34.3
MGA_425	LOCUS_04210	sequence02:414042..414524(-)	partial			WP_003400804.1	GTP-binding protein	63.1	25.1	51.5
MGA_426	LOCUS_04220	sequence02:414439..415437(-)	partial			WP_005072487.1	GTP-binding protein	87.0	72.9	64.4
MGA_433	LOCUS_04290	sequence02:419756..419974(-)	partial			WP_005078828.1	nitroreductase family deazaflavin-dependent oxidoreductase	77.8	40.6	57.1
MGA_446	LOCUS_04410	sequence02:435323..435568(+)	partial			WP_003419577.1	inorganic diphosphatase	100.0	50.0	80.2
MGA_451	LOCUS_04460	sequence02:441630..442376(+)	partial			WP_003409179.1	PPE family protein	83.9	51.4	48.1
MGA_455	LOCUS_04500	sequence02:447079..447330(+)	partial			WP_011031398.1	fluoride efflux transporter CrcB	100.0	53.9	47.0
MGA_461	LOCUS_04560	sequence02:452161..453225(-)	partial			WP_003414680.1	PPE family protein	59.6	51.7	52.6
MGA_462	LOCUS_04570	sequence02:453356..453922(-)	partial			WP_010908448.1	bifunctional RNase H/acid phosphatase	73.9	40.2	30.9
MGA_493	LOCUS_04880	sequence02:482853..483773(+)	partial			WP_003407779.1	MMPL family transporter	100.0	31.7	71.0
MGA_494	LOCUS_04890	sequence02:483909..485903(+)	partial			WP_003407779.1	MMPL family transporter	97.3	66.8	73.7
MGA_498	LOCUS_04930	sequence02:487545..487964(-)	partial			WP_013225759.1	membrane protein	76.3	67.3	31.1
MGA_500	LOCUS_04950	sequence02:490338..491288(+)	partial			WP_003404801.1	fumarylacetoacetate hydrolase family protein	100.0	48.8	73.7
MGA_501	LOCUS_04960	sequence02:491321..492988(-)	partial			WP_000391771.1	cellulase family glycosylhydrolase	32.1	32.0	26.8
MGA_506	LOCUS_05010	sequence02:496787..497503(-)	partial			WP_003898656.1	DUF4873 domain-containing protein	74.8	57.5	39.0
MGA_507	LOCUS_05020	sequence02:497500..498402(-)	partial			WP_011730613.1	diiron oxygenase	100.0	73.1	71.0
MGA_516	LOCUS_05110	sequence02:506016..506279(-)	partial			WP_003404838.1	chorismate mutase	82.8	68.6	79.2
MGA_523	LOCUS_05180	sequence02:515279..516181(+)	partial			WP_041322304.1	DUF5336 domain-containing protein	56.3	57.6	48.3
MGA_532	LOCUS_05270	sequence02:524878..525480(-)	partial			WP_003899957.1	RES family NAD+ phosphorylase	78.5	73.3	28.7
MGA_549	LOCUS_05440	sequence02:541805..543109(-)	partial			WP_003911742.1	alpha/beta hydrolase	47.9	32.6	39.4
MGA_574	LOCUS_05690	sequence02:568745..569107(-)	partial			WP_010907580.1	zinc ribbon domain-containing protein	49.2	59.6	84.7
MGA_583	LOCUS_05780	sequence02:575783..575959(+)	partial			WP_005766948.1	type II toxin-antitoxin system VapC family toxin	93.1	41.3	50.0
MGA_586	LOCUS_05810	sequence02:579171..579851(+)	frameshift		579620	WP_011728926.1	hypothetical protein	54.4	41.0	45.5
MGA_587	LOCUS_05820	sequence02:579767..580102(+)	frameshift		579620	WP_011728926.1	hypothetical protein	91.9	34.9	45.6
MGA_652	LOCUS_06460	sequence02:644662..645873(-)	partial			WP_003899118.1	PecA family PE domain-processing aspartic protease	70.2	50.7	42.6
MGA_653	LOCUS_06470	sequence02:646028..647233(-)	partial			WP_010950639.1	PecA family PE domain-processing aspartic protease	72.8	52.3	39.1
MGA_656	LOCUS_06500	sequence02:650886..651605(+)	frameshift		651452	WP_003401910.1	FAD-binding oxidoreductase	79.9	49.5	62.6
MGA_657	LOCUS_06510	sequence02:651605..652021(+)	frameshift		651452	WP_003401910.1	FAD-binding oxidoreductase	99.3	35.1	83.2
MGA_666	LOCUS_06600	sequence02:659276..659869(+)	partial			WP_013228914.1	NAD(P)H-binding protein	80.2	74.6	34.8
MGA_673	LOCUS_06670	sequence02:664433..664663(-)	partial			WP_064242138.1	type II toxin-antitoxin system prevent-host-death family antitoxin	75.0	68.4	47.4
MGA_680	LOCUS_06740	sequence02:669008..671359(+)	frameshift		671347	WP_003401734.1	(Fe-S)-binding protein	93.5	82.4	71.9
MGA_689	LOCUS_06830	sequence02:677825..678781(-)	partial			WP_011727115.1	hypothetical protein	74.5	42.5	51.0
MGA_690	LOCUS_06840	sequence02:678849..680084(-)	partial			WP_011727115.1	hypothetical protein	85.9	58.2	40.4
MGA_697	LOCUS_06910	sequence02:684034..684348(+)	partial			WP_003899417.1	DUF2742 domain-containing protein	94.2	73.1	42.9
MGA_698	LOCUS_06920	sequence02:684345..686447(+)	partial			WP_013531683.1	phage/plasmid primase, P4 family	41.0	63.4	26.6
MGA_729	LOCUS_07230	sequence02:710509..711042(-)	frameshift		711071	WP_003401524.1	type VII secretion system ESX-3 subunit EccD3	100.0	37.5	62.7
MGA_730	LOCUS_07240	sequence02:711039..711947(-)	frameshift		711071	WP_010950375.1	type VII secretion system ESX-3 subunit EccD3	94.7	60.4	54.2
MGA_736	LOCUS_07300	sequence02:715352..716782(-)	internal_stop_codon	716897..716899(-)		WP_003401478.1	type VII secretion system ESX-3 FtsK/SpoIIIE family ATPase EccC3	98.3	35.6	79.1
MGA_737	LOCUS_07310	sequence02:716897..719179(-)	internal_stop_codon	716897..716899(-)		WP_003401478.1	type VII secretion system ESX-3 FtsK/SpoIIIE family ATPase EccC3	99.3	56.4	75.1
MGA_739	LOCUS_07330	sequence02:719308..719691(-)	partial			WP_003401472.1	type VII secretion system ESX-3 subunit EccB3	87.4	20.4	53.2
MGA_750	LOCUS_07430	sequence02:729884..730747(-)	partial			WP_038967370.1	aromatic ring-hydroxylating dioxygenase subunit alpha	69.0	57.3	39.6
MGA_753	LOCUS_07460	sequence02:733085..733429(-)	partial			WP_005112857.1	cytochrome P450	93.9	25.2	44.9
MGA_754	LOCUS_07470	sequence02:733467..734366(-)	frameshift		734377	WP_145764452.1	IS3 family transposase	97.7	75.1	57.4
MGA_755	LOCUS_07480	sequence02:734363..734695(-)	frameshift		734380	WP_172463354.1	IS3 family transposase	95.5	24.2	47.6
MGA_756	LOCUS_07490	sequence02:734759..735664(-)	partial			WP_011729152.1	cytochrome P450	96.7	70.4	36.1
MGA_759	LOCUS_07520	sequence02:738171..739418(-)	partial			WP_011015171.1	PucR family transcriptional regulator	73.3	77.9	27.9
MGA_770	LOCUS_07620	sequence02:752878..753210(+)	frameshift		753192	WP_172463354.1	IS3 family transposase	95.5	24.2	49.1
MGA_771	LOCUS_07630	sequence02:753207..754106(+)	frameshift		753195	WP_145764452.1	IS3 family transposase	97.7	75.1	56.0
MGA_781	LOCUS_07730	sequence02:766617..767981(-)	partial			WP_010967746.1	GMC family oxidoreductase N-terminal domain-containing protein	91.6	73.3	27.9
MGA_783	LOCUS_07750	sequence02:768361..769206(+)	frameshift		768247	WP_211285741.1	IS3 family transposase	100.0	73.2	86.8
MGA_784	LOCUS_07760	sequence02:769161..769700(-)	partial			WP_086840467.1	GMC family oxidoreductase N-terminal domain-containing protein	83.8	26.3	36.4
MGA_805	LOCUS_07970	sequence02:795405..795638(+)	frameshift		795393	WP_003899883.1	hydantoinase B/oxoprolinase family protein	96.1	6.1	77.0
MGA_808	LOCUS_08000	sequence02:797449..798222(+)	frameshift		797437	WP_003891754.1	5-oxoprolinase/urea amidolyase family protein	96.9	84.7	75.9
MGA_812	LOCUS_08040	sequence02:802145..802453(+)	partial			WP_003401357.1	uroporphyrinogen-III synthase	89.2	23.9	68.1
MGA_835	LOCUS_08270	sequence02:827390..827995(-)	partial			WP_030867225.1	TetR/AcrR family transcriptional regulator	77.6	74.2	34.4
MGA_836	LOCUS_08280	sequence02:828133..829626(+)	partial			WP_003901256.1	PPE family protein	89.7	68.7	41.1
MGA_891	LOCUS_08830	sequence02:897025..897900(-)	partial			WP_003916225.1	L,D-transpeptidase LdtMt4	86.3	68.6	81.3
MGA_900	LOCUS_08920	sequence02:904650..905969(-)	partial			WP_164928895.1	fatty acyl-AMP ligase	90.7	69.0	39.9
MGA_905	LOCUS_08960	sequence02:910128..911804(-)	partial			WP_010950653.1	alpha/beta hydrolase	34.9	30.2	39.3
MGA_917	LOCUS_09080	sequence02:921395..922759(+)	partial			WP_012296373.1	MlaD family protein	81.7	73.3	67.1
MGA_921	LOCUS_09120	sequence02:926109..927167(+)	internal_stop_codon	927165..927167(+)		WP_175048384.1	MlaD family protein	96.3	83.3	67.6
MGA_945	LOCUS_09360	sequence02:949775..950860(-)	partial			WP_003401056.1	FAD-binding oxidoreductase	88.4	71.0	71.2
MGA_953	LOCUS_09440	sequence02:955976..956839(-)	partial			WP_003406369.1	amidase	70.4	41.6	44.6
MGA_955	LOCUS_09460	sequence02:958329..960860(-)	partial			WP_011013632.1	ABC transporter permease	68.9	69.2	20.8
MGA_973	LOCUS_09640	sequence02:977108..978364(+)	partial			WP_003408385.1	DNA repair protein RecN	81.1	57.8	70.5
MGA_991	LOCUS_09820	sequence02:996711..997247(-)	partial			WP_003411901.1	helix-turn-helix domain-containing protein	53.9	84.2	77.1
MGA_1001	LOCUS_09920	sequence02:1007118..1007549(-)	partial			WP_005074775.1	DUF6319 family protein	54.5	68.4	61.5
MGA_1017	LOCUS_10080	sequence02:1021030..1022772(-)	partial			WP_011015416.1	cytochrome b/b6 domain-containing protein	54.3	48.2	40.4
MGA_1025	LOCUS_10160	sequence02:1033227..1035032(+)	partial			WP_003408854.1	type VII secretion system ESX-5 serine protease mycosin MycP5	58.7	61.2	62.6
MGA_1069	LOCUS_10590	sequence02:1080834..1081460(+)	frameshift		1080771	WP_003899051.1	sulfate/molybdate ABC transporter ATP-binding protein	99.0	54.7	57.8
MGA_1070	LOCUS_10600	sequence02:1081498..1082358(+)	partial			WP_003409337.1	adhesin Apa	63.3	56.0	68.9
MGA_1087	LOCUS_10770	sequence02:1098512..1098748(-)	partial			WP_003895017.1	(2Fe-2S)-binding protein	59.0	66.7	60.9
MGA_1095	LOCUS_10850	sequence02:1106910..1108037(+)	partial			WP_003899065.1	hypothetical protein	74.7	72.9	30.1
MGA_1102	LOCUS_10920	sequence02:1113964..1114422(+)	partial			WP_049746361.1	hypothetical protein	69.1	69.9	39.5
MGA_1110	LOCUS_11000	sequence02:1122022..1122780(-)	partial			WP_005110315.1	tail protein	97.2	66.5	30.7
MGA_1112	LOCUS_11020	sequence02:1123381..1124226(-)	frameshift		1124339	WP_211285741.1	IS3 family transposase	100.0	73.2	86.5
MGA_1115	LOCUS_11050	sequence02:1125309..1125668(-)	partial			WP_005110314.1	hypothetical protein	98.3	19.6	42.7
MGA_1132	LOCUS_11220	sequence02:1141220..1141714(+)	partial			WP_003978019.1	MarR family winged helix-turn-helix transcriptional regulator	65.2	61.9	42.1
MGA_1133	LOCUS_11230	sequence02:1141827..1142831(+)	partial			WP_003901258.1	PPE family protein	65.0	53.1	55.9
MGA_1145	LOCUS_11350	sequence02:1154171..1155016(+)	partial			WP_013229059.1	NlpC/P60 family protein	60.9	57.7	29.6
MGA_1184	LOCUS_11740	sequence02:1183010..1183630(+)	partial			WP_011729639.1	LuxR C-terminal-related transcriptional regulator	98.5	22.5	41.2
MGA_1187	LOCUS_11770	sequence02:1185969..1186472(-)	partial			WP_014876824.1	hypothetical protein	94.6	74.0	65.7
MGA_1191	LOCUS_11810	sequence02:1191100..1191393(-)	partial			WP_029104282.1	HNH endonuclease signature motif containing protein	97.9	19.4	46.5
MGA_1193	LOCUS_11830	sequence02:1192145..1192534(-)	partial			WP_003404098.1	Dyp-type peroxidase	76.0	29.3	73.5
MGA_1201	LOCUS_11910	sequence02:1201308..1201436(+)	partial			WP_003894373.1	acyl-CoA dehydrogenase family protein	92.9	9.3	71.8
MGA_1203	LOCUS_11930	sequence02:1202640..1202996(-)	partial			WP_003404135.1	DUF3073 domain-containing protein	30.5	60.0	86.1
MGA_1205	LOCUS_11950	sequence02:1204059..1204361(+)	frameshift		1204331	WP_003916726.1	aminodeoxychorismate lyase	78.0	27.0	66.7
MGA_1206	LOCUS_11960	sequence02:1204361..1204879(+)	frameshift		1204331	WP_003916726.1	aminodeoxychorismate lyase	98.8	61.6	64.8
MGA_1220	LOCUS_12100	sequence02:1215412..1215675(+)	partial			WP_010908754.1	phosphate ABC transporter ATP-binding protein PstB	100.0	33.7	90.8
MGA_1223	LOCUS_12130	sequence02:1219135..1219296(-)	frameshift		1219346	WP_005112722.1	phosphate ABC transporter permease PstA	88.7	15.7	70.2
MGA_1224	LOCUS_12140	sequence02:1219344..1220039(-)	frameshift		1220058	WP_003404779.1	phosphate ABC transporter permease subunit PstC	97.0	69.1	74.6
MGA_1225	LOCUS_12150	sequence02:1220096..1221022(-)	frameshift,internal_stop_codon	1221078..1221080(-),1221038..1221040(-)	1221041	WP_005112724.1	phosphate ABC transporter substrate-binding protein PstS	100.0	83.3	71.9
MGA_1226	LOCUS_12160	sequence02:1221078..1221248(-)	frameshift,internal_stop_codon	1221078..1221080(-),1221038..1221040(-)	1221041	WP_010908715.1	phosphate ABC transporter substrate-binding protein PstS	100.0	14.6	53.6
MGA_1227	LOCUS_12170	sequence02:1221455..1224181(+)	frameshift		1223755	WP_005134001.1	ATP-dependent RNA helicase HrpA	82.6	57.8	74.2
MGA_1228	LOCUS_12180	sequence02:1224165..1225382(+)	partial			WP_011731383.1	ATP-dependent RNA helicase HrpA	99.5	30.6	58.3
MGA_1238	LOCUS_12280	sequence02:1237244..1237480(-)	partial			WP_011728248.1	acyl-CoA synthetase	93.6	13.3	72.6
MGA_1256	LOCUS_12460	sequence02:1253078..1253704(+)	partial			WP_011727673.1	50S ribosomal protein L22	56.7	77.1	77.1
MGA_1260	LOCUS_12500	sequence02:1255213..1255530(+)	partial			WP_003898560.1	30S ribosomal protein S17	94.3	74.1	87.0
MGA_1290	LOCUS_12800	sequence02:1281715..1284141(-)	partial			WP_011404082.1	FtsX-like permease family protein	68.6	66.7	23.5
MGA_1293	LOCUS_12830	sequence02:1285765..1285983(+)	partial			WP_003896616.1	sigma-70 family RNA polymerase sigma factor	94.4	44.3	44.2
MGA_1298	LOCUS_12880	sequence02:1289728..1290255(+)	partial			WP_011727700.1	haloacid dehalogenase	81.7	56.6	39.7
MGA_1302	LOCUS_12920	sequence02:1292945..1294729(+)	frameshift		1294714	WP_003403850.1	phosphoglycerate mutase PE_PGRS11	12.8	13.9	43.2
MGA_1304	LOCUS_12940	sequence02:1294928..1295599(+)	partial			WP_004530004.1	AMP-binding protein	52.0	9.3	46.4
MGA_1323	LOCUS_13130	sequence02:1310893..1311438(+)	partial			WP_003418346.1	50S ribosomal protein L17	71.8	72.2	90.0
MGA_1327	LOCUS_13170	sequence02:1313905..1314951(+)	partial			WP_003418333.1	type VII secretion system ESX-4 subunit EccB4	59.5	47.0	44.1
MGA_1329	LOCUS_13190	sequence02:1316195..1317343(-)	partial			WP_003900062.1	type VII secretion system ESX-4 subunit EccD4	51.3	43.5	38.2
MGA_1330	LOCUS_13200	sequence02:1317520..1320522(+)	frameshift,internal_stop_codon	1320523..1320525(+),1317892..1317894(+)	1317888,1317936,1317867	WP_003912232.1	type VII secretion system ESX-4 FtsK/SpoIIIE family ATPase EccC4	99.8	84.3	57.2
MGA_1332	LOCUS_13210	sequence02:1321403..1322104(+)	partial			WP_003418324.1	type VII secretion-associated protein	96.1	57.7	47.9
MGA_1333	LOCUS_13220	sequence02:1322115..1322975(-)	partial			WP_010968126.1	AraC family transcriptional regulator	49.0	49.8	31.8
MGA_1335	LOCUS_13240	sequence02:1324404..1326320(+)	partial			WP_011727252.1	hypothetical protein	14.6	6.8	41.5
MGA_1336	LOCUS_13250	sequence02:1326317..1327759(-)	partial			WP_003401003.1	PE-PPE domain-containing protein	81.5	70.3	39.1
MGA_1338	LOCUS_13270	sequence02:1328340..1328636(+)	partial			WP_003900059.1	WXG100 family type VII secretion target	74.5	73.0	76.7
MGA_1349	LOCUS_13380	sequence02:1337863..1338612(+)	partial			WP_011727252.1	hypothetical protein	37.8	6.8	37.9
MGA_1354	LOCUS_13430	sequence02:1343587..1343985(-)	partial			WP_003914906.1	LuxR family transcriptional regulator	93.9	10.9	66.9
MGA_1357	LOCUS_13460	sequence02:1346611..1347195(+)	partial			WP_011727252.1	hypothetical protein	43.3	6.7	47.1
MGA_1362	LOCUS_13510	sequence02:1353136..1353996(-)	partial			WP_003900105.1	sensor domain-containing protein	66.8	80.2	26.7
MGA_1363	LOCUS_13520	sequence02:1354027..1354908(-)	partial			WP_003900105.1	sensor domain-containing protein	66.9	82.3	32.7
MGA_1381	LOCUS_13690	sequence02:1372635..1373672(-)	partial			WP_003400998.1	PE-PPE domain-containing protein	67.8	35.5	29.6
MGA_1405	LOCUS_13930	sequence02:1401280..1401825(-)	partial			WP_011727789.1	error-prone DNA polymerase	56.9	8.3	70.9
MGA_1406	LOCUS_13940	sequence02:1401992..1404121(+)	frameshift		1404112	WP_003417885.1	error-prone DNA polymerase DnaE2	100.0	64.5	80.5
MGA_1407	LOCUS_13950	sequence02:1404118..1404531(+)	frameshift		1404112	WP_003908228.1	error-prone DNA polymerase DnaE2	100.0	12.7	79.6
MGA_1413	LOCUS_14010	sequence02:1410599..1411783(+)	partial			WP_003409179.1	PPE family protein	62.7	62.0	36.8
MGA_1441	LOCUS_14290	sequence02:1439548..1441011(+)	partial			WP_013224247.1	cellulase family glycosylhydrolase	64.1	58.1	28.9
MGA_1443	LOCUS_14310	sequence02:1441209..1442672(+)	partial			WP_003901256.1	PPE family protein	92.8	67.9	40.8
MGA_1448	LOCUS_14360	sequence02:1449128..1450651(+)	partial			WP_003401347.1	PPE family protein	70.2	64.2	55.7
MGA_1449	LOCUS_14370	sequence02:1450651..1451304(+)	partial			WP_011027746.1	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	95.9	46.5	54.1
MGA_1450	LOCUS_14380	sequence02:1451584..1453203(+)	partial			WP_003401347.1	PPE family protein	64.9	58.1	40.5
MGA_1451	LOCUS_14390	sequence02:1453170..1453409(+)	partial			WP_003401347.1	PPE family protein	96.2	12.4	46.1
MGA_1453	LOCUS_14410	sequence02:1454022..1455773(-)	partial			WP_012256222.1	ABC transporter ATP-binding protein	42.7	69.8	50.4
MGA_1464	LOCUS_14520	sequence02:1467131..1468204(-)	frameshift		1467826,1467883,1468223	WP_013227131.1	NAD(P)/FAD-dependent oxidoreductase	87.1	80.3	31.1
MGA_1470	LOCUS_14580	sequence02:1471485..1472849(-)	partial			WP_013228815.1	cobyrinate a,c-diamide synthase	74.7	75.5	57.9
MGA_1472	LOCUS_14600	sequence02:1473457..1473753(-)	partial			WP_209898453.1	VWA domain-containing protein	100.0	12.9	55.1
MGA_1473	LOCUS_14610	sequence02:1473750..1474604(-)	partial			WP_013228817.1	putative cobaltochelatase	95.4	40.6	66.2
MGA_1475	LOCUS_14630	sequence02:1475603..1476247(+)	internal_stop_codon	1476245..1476247(+)		WP_013228818.1	bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase	96.7	50.3	48.8
MGA_1476	LOCUS_14640	sequence02:1476383..1476802(+)	internal_stop_codon	1476245..1476247(+)		WP_013228818.1	bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase	97.1	33.5	58.5
MGA_1477	LOCUS_14650	sequence02:1476788..1477222(-)	partial			WP_013228819.1	precorrin-4 C(11)-methyltransferase	97.9	54.5	54.5
MGA_1479	LOCUS_14660	sequence02:1477499..1477906(+)	partial			WP_011391131.1	precorrin-4 C(11)-methyltransferase	31.9	17.0	55.8
MGA_1482	LOCUS_14690	sequence02:1480070..1480879(-)	partial			WP_003900454.1	precorrin-3B synthase	98.9	72.5	33.7
MGA_1483	LOCUS_14700	sequence02:1481083..1481259(-)	frameshift		1481252,1481245	WP_010908934.1	enoyl-CoA hydratase-related protein	87.9	23.3	68.6
MGA_1484	LOCUS_14710	sequence02:1481193..1481744(-)	frameshift		1481252,1481245	WP_010908934.1	enoyl-CoA hydratase-related protein	85.2	69.4	74.4
MGA_1500	LOCUS_14870	sequence02:1493643..1494191(-)	partial			WP_003905037.1	IS110 family transposase	95.6	30.5	78.7
MGA_1511	LOCUS_14980	sequence02:1504086..1505558(+)	partial			WP_003900817.1	PE-PPE domain-containing protein	58.4	55.0	37.5
MGA_1512	LOCUS_14990	sequence02:1505725..1507140(+)	partial			WP_003400998.1	PE-PPE domain-containing protein	58.4	43.7	36.7
MGA_1513	LOCUS_15000	sequence02:1507145..1508539(+)	partial			WP_010950605.1	PPE family protein	64.0	42.0	38.0
MGA_1529	LOCUS_15160	sequence02:1528215..1528454(-)	partial			WP_011727888.1	CsbD family protein	67.1	66.2	66.0
MGA_1531	LOCUS_15180	sequence02:1529152..1529463(+)	partial			WP_003417162.1	protein UsfY	96.1	72.3	53.5
MGA_1535	LOCUS_15220	sequence02:1531800..1532207(+)	partial			WP_003406169.1	hemophore-related protein	56.3	69.1	59.2
MGA_1536	LOCUS_15230	sequence02:1532321..1533067(+)	partial			WP_011030978.1	type 1 glutamine amidotransferase domain-containing protein	58.1	80.0	65.3
MGA_1541	LOCUS_15280	sequence02:1535794..1536228(-)	partial			WP_005081099.1	STAS domain-containing protein	76.4	72.5	43.2
MGA_1546	LOCUS_15330	sequence02:1540365..1540844(+)	partial			WP_011727224.1	MPT63 family protein	100.0	46.1	40.6
MGA_1556	LOCUS_15430	sequence02:1545932..1546459(+)	partial			WP_003410150.1	universal stress protein	90.9	54.1	35.8
MGA_1566	LOCUS_15530	sequence02:1554130..1554681(+)	partial			WP_011030506.1	PaaI family thioesterase	76.0	73.2	40.8
MGA_1569	LOCUS_15560	sequence02:1556220..1556564(+)	frameshift		1556480	WP_005086620.1	PaaI family thioesterase	78.9	62.1	71.1
MGA_1580	LOCUS_15670	sequence02:1566597..1567526(+)	partial			WP_003911958.1	DDE-type integrase/transposase/recombinase	81.6	65.6	87.7
MGA_1583	LOCUS_15700	sequence02:1570990..1571349(+)	partial			WP_003911958.1	DDE-type integrase/transposase/recombinase	100.0	31.0	79.0
MGA_1606	LOCUS_15930	sequence02:1597442..1597606(-)	frameshift,internal_stop_codon	1597622..1597624(-),1597442..1597444(-)	1597889	WP_011728521.1	IS30-like element ISMsm8 family transposase	100.0	11.6	75.9
MGA_1607	LOCUS_15940	sequence02:1597622..1597777(-)	frameshift,internal_stop_codon	1597622..1597624(-),1597442..1597444(-)	1597889	WP_011728521.1	IS30-like element ISMsm8 family transposase	100.0	10.9	68.6
MGA_1608	LOCUS_15950	sequence02:1598190..1598501(-)	partial			WP_003410726.1	hypothetical protein	64.1	60.4	59.1
MGA_1627	LOCUS_16140	sequence02:1618721..1619110(-)	frameshift		1619139	WP_011727932.1	TIGR03089 family protein	96.9	53.4	69.6
MGA_1628	LOCUS_16150	sequence02:1619465..1621612(-)	partial			WP_011727484.1	serine/threonine-protein kinase	50.3	58.7	54.6
MGA_1645	LOCUS_16320	sequence02:1638246..1639244(-)	partial			WP_010950374.1	PPE family protein	53.3	33.0	50.3
MGA_1665	LOCUS_16520	sequence02:1664477..1664836(-)	partial			WP_003416932.1	Rv3235 family protein	100.0	52.6	52.1
MGA_1673	LOCUS_16600	sequence02:1673110..1674693(+)	partial			WP_011730586.1	LpqN/LpqT family lipoprotein	53.7	45.8	55.5
MGA_1674	LOCUS_16610	sequence02:1674931..1676004(+)	partial			WP_003400998.1	PE-PPE domain-containing protein	65.3	38.3	42.0
MGA_1677	LOCUS_16640	sequence02:1677616..1678353(+)	frameshift		1677574	WP_087902221.1	IS3-like element IS987 family transposase	93.1	52.9	63.9
MGA_1678	LOCUS_16650	sequence02:1678350..1678760(+)	frameshift		1678721,1678995	WP_015776570.1	IS5 family transposase	90.4	40.6	64.2
MGA_1679	LOCUS_16660	sequence02:1679001..1679270(+)	frameshift		1678995,1678724	WP_015776570.1	IS5 family transposase	93.3	27.4	62.7
MGA_1680	LOCUS_16670	sequence02:1679240..1679545(+)	partial			WP_087902221.1	IS3-like element IS987 family transposase	81.2	19.5	74.4
MGA_1683	LOCUS_16700	sequence02:1681378..1682655(+)	partial			WP_003901258.1	PPE family protein	51.1	53.1	46.3
MGA_1685	LOCUS_16720	sequence02:1683936..1684394(-)	frameshift		1684426	WP_011727030.1	IS630-like element ISMsm5 family transposase	95.4	41.1	65.5
MGA_1686	LOCUS_16730	sequence02:1684705..1685217(+)	partial			WP_059232860.1	IS256 family transposase	94.7	37.7	50.3
MGA_1687	LOCUS_16740	sequence02:1685226..1685558(-)	partial			WP_011727030.1	IS630-like element ISMsm5 family transposase	87.3	27.2	50.0
MGA_1688	LOCUS_16750	sequence02:1685608..1686885(-)	partial			WP_003899026.1	PPE family protein	48.9	49.2	46.6
MGA_1689	LOCUS_16760	sequence02:1686892..1688232(-)	partial			WP_003409179.1	PPE family protein	72.0	84.4	38.7
MGA_1700	LOCUS_16870	sequence02:1697822..1698361(+)	partial			WP_003413657.1	anti-sigma factor antagonist	58.7	70.9	54.3
MGA_1703	LOCUS_16900	sequence02:1699744..1700043(+)	partial			WP_003416891.1	mycothiol system anti-sigma-R factor	75.8	74.3	78.7
MGA_1709	LOCUS_16960	sequence02:1704456..1704890(+)	partial			WP_005056347.1	hypothetical protein	66.7	71.1	59.4
MGA_1710	LOCUS_16970	sequence02:1704850..1705488(-)	frameshift		1705529	WP_003416879.1	isochorismate synthase	95.3	54.3	75.2
MGA_1711	LOCUS_16980	sequence02:1705518..1705913(-)	frameshift		1705529	WP_003416879.1	isochorismate synthase	96.9	34.1	52.0
MGA_1728	LOCUS_17150	sequence02:1720952..1722484(+)	frameshift		1722227	WP_011728029.1	ATP-dependent DNA helicase AdnB	80.8	37.4	73.4
MGA_1729	LOCUS_17160	sequence02:1722490..1724160(+)	frameshift		1722227	WP_003416833.1	ATP-dependent DNA helicase AdnB	99.6	47.7	63.7
MGA_1749	LOCUS_17360	sequence02:1742098..1743168(+)	partial			WP_064496538.1	intein-containing phosphoenolpyruvate synthase	91.0	26.8	38.0
MGA_1758	LOCUS_17450	sequence02:1749758..1751482(-)	partial			WP_003243243.1	PEP/pyruvate-binding domain-containing protein	72.1	48.6	29.1
MGA_1760	LOCUS_17470	sequence02:1753040..1754554(+)	partial			WP_013226169.1	methane monooxygenase	77.8	71.9	23.9
MGA_1790	LOCUS_17770	sequence02:1785055..1785711(+)	internal_stop_codon	1785001..1785003(+)		WP_068319765.1	ISL3 family transposase	89.9	48.5	37.1
MGA_1801	LOCUS_17880	sequence02:1796663..1797118(+)	partial			WP_011228480.1	helix-turn-helix domain-containing protein	57.0	62.8	40.7
MGA_1850	LOCUS_18370	sequence02:1843003..1843404(+)	partial			WP_003416124.1	hypothetical protein	55.6	52.4	59.7
MGA_1851	LOCUS_18380	sequence02:1843314..1843751(+)	partial			WP_011728142.1	cell division ATP-binding protein FtsE	100.0	63.3	91.7
MGA_1854	LOCUS_18410	sequence02:1845552..1846007(+)	frameshift		1845607	WP_011729048.1	DMT family transporter	81.5	45.8	31.8
MGA_1857	LOCUS_18440	sequence02:1848104..1848478(-)	partial			WP_010974556.1	PIN domain-containing protein	60.5	54.3	53.3
MGA_1858	LOCUS_18450	sequence02:1848480..1849016(-)	partial			WP_011228480.1	helix-turn-helix domain-containing protein	55.6	72.3	47.5
MGA_1880	LOCUS_18670	sequence02:1868280..1869065(-)	partial			WP_005082425.1	class II aldolase/adducin family protein	71.6	69.7	34.2
MGA_1888	LOCUS_18750	sequence02:1876813..1878468(+)	frameshift		1876817	WP_003902404.1	acyl-CoA dehydrogenase	99.8	76.3	71.8
MGA_1906	LOCUS_18930	sequence02:1895206..1896732(+)	partial			WP_003901256.1	PPE family protein	85.8	66.7	39.2
MGA_1907	LOCUS_18940	sequence02:1896745..1898136(-)	partial			WP_015909439.1	flagellar filament outer layer protein FlaA	46.4	24.6	31.9
MGA_1911	LOCUS_18980	sequence02:1904572..1905909(+)	partial			WP_000110082.1	restriction endonuclease subunit S	38.0	28.4	37.6
MGA_1926	LOCUS_19130	sequence02:1919939..1920493(+)	partial			WP_003415943.1	hypothetical protein	96.7	63.2	76.4
MGA_1928	LOCUS_19150	sequence02:1921370..1922380(+)	partial			WP_003403850.1	phosphoglycerate mutase PE_PGRS11	86.3	49.0	43.9
MGA_1929	LOCUS_19160	sequence02:1922508..1923605(+)	partial			WP_003403850.1	phosphoglycerate mutase PE_PGRS11	81.1	49.0	42.7
MGA_1939	LOCUS_19260	sequence02:1932863..1933507(-)	partial			WP_013222574.1	LLM class flavin-dependent oxidoreductase	79.0	49.2	30.9
MGA_1977	LOCUS_19640	sequence02:1969656..1970126(-)	partial			WP_003899074.1	DUF4262 domain-containing protein	96.2	69.8	56.0
MGA_2016	LOCUS_20020	sequence02:2007211..2007735(+)	partial			WP_003415034.1	thiamine-phosphate kinase	94.8	48.9	62.4
MGA_2041	LOCUS_20270	sequence02:2028013..2029290(-)	partial			WP_197030926.1	CDC48 family AAA ATPase	63.1	33.2	32.7
MGA_2046	LOCUS_20320	sequence02:2033903..2035369(-)	partial			WP_070090119.1	IS110 family transposase	58.6	64.0	27.2
MGA_2051	LOCUS_20370	sequence02:2040909..2041517(+)	partial			WP_010870259.1	DUF2202 domain-containing protein	71.3	77.8	41.0
MGA_2055	LOCUS_20410	sequence02:2044147..2045652(+)	partial			WP_011086306.1	YeeE/YedE thiosulfate transporter family protein	19.4	51.4	45.4
MGA_2058	LOCUS_20440	sequence02:2047516..2047995(-)	frameshift		2048136,2048226	WP_084879622.1	IS110 family transposase	95.0	41.8	48.3
MGA_2059	LOCUS_20450	sequence02:2048718..2049683(-)	partial			WP_013228562.1	helix-turn-helix transcriptional regulator	84.1	67.2	28.5
MGA_2060	LOCUS_20460	sequence02:2049720..2050565(-)	frameshift		2050678	WP_211285741.1	IS3 family transposase	100.0	73.2	87.2
MGA_2066	LOCUS_20520	sequence02:2055343..2055468(-)	partial			WP_235677901.1	transposase	95.1	34.2	79.5
MGA_2067	LOCUS_20530	sequence02:2055542..2061907(+)	partial			WP_013224347.1	helix-turn-helix transcriptional regulator	38.3	80.8	26.7
MGA_2087	LOCUS_20730	sequence02:2084836..2085750(+)	frameshift		2085735	WP_003899282.1	TPM domain-containing protein	99.7	45.6	52.5
MGA_2088	LOCUS_20740	sequence02:2085747..2086859(+)	frameshift		2085738	WP_003899282.1	TPM domain-containing protein	86.8	48.2	53.1
MGA_2110	LOCUS_20960	sequence02:2104616..2105263(+)	partial			WP_011144354.1	class I SAM-dependent methyltransferase	76.7	57.3	37.4
MGA_2111	LOCUS_20970	sequence02:2105264..2105944(-)	partial			WP_013226396.1	helix-turn-helix transcriptional regulator	68.1	54.7	34.8
MGA_2125	LOCUS_21110	sequence02:2122918..2129589(-)	partial			WP_011729886.1	non-ribosomal peptide synthetase	70.5	84.6	58.8
MGA_2132	LOCUS_21180	sequence02:2137098..2139542(-)	frameshift		2139685	WP_010950705.1	phenyloxazoline synthase MbtB	99.9	58.2	61.6
MGA_2133	LOCUS_21190	sequence02:2139539..2140498(-)	frameshift		2139688	WP_011729889.1	phenyloxazoline synthase MbtB	83.1	23.5	64.7
MGA_2151	LOCUS_21370	sequence02:2158488..2159456(-)	partial			WP_013225185.1	DUF2231 domain-containing protein	46.3	75.4	34.9
MGA_2154	LOCUS_21400	sequence02:2161538..2161933(-)	partial			WP_003412293.1	resuscitation-promoting factor protein RpfD	81.7	68.2	60.6
MGA_2159	LOCUS_21450	sequence02:2166376..2166666(+)	frameshift		2166621	WP_188683277.1	IS5 family transposase	86.5	26.9	77.1
MGA_2160	LOCUS_21460	sequence02:2166614..2167168(+)	frameshift		2166621	WP_188683277.1	IS5 family transposase	98.4	62.1	58.5
MGA_2167	LOCUS_21530	sequence02:2174150..2175301(+)	frameshift,internal_stop_codon	2174856..2174858(+)	2174800,2174933	WP_003899026.1	PPE family protein	46.0	41.4	38.6
MGA_2173	LOCUS_21590	sequence02:2181416..2182063(+)	partial			WP_003895084.1	hypothetical protein	85.1	73.2	52.7
MGA_2178	LOCUS_21640	sequence02:2187137..2187880(-)	partial			WP_011729715.1	transcriptional regulator AmtR	69.2	76.0	66.7
MGA_2201	LOCUS_21870	sequence02:2208107..2209297(+)	partial			WP_003901256.1	PPE family protein	77.8	46.4	42.2
MGA_2205	LOCUS_21910	sequence02:2212419..2213285(+)	partial			WP_003899539.1	[protein-PII] uridylyltransferase	96.2	34.7	59.6
MGA_2214	LOCUS_22000	sequence02:2219408..2219620(+)	frameshift		2219297	WP_010918726.1	PIN domain-containing protein	81.4	43.8	54.4
MGA_2217	LOCUS_22030	sequence02:2221172..2221684(+)	partial			WP_003414731.1	30S ribosomal protein S16	62.9	66.0	89.7
MGA_2229	LOCUS_22150	sequence02:2229318..2230217(+)	partial			WP_003403850.1	phosphoglycerate mutase PE_PGRS11	49.8	27.2	27.5
MGA_2232	LOCUS_22180	sequence02:2232940..2234598(+)	partial			WP_013228023.1	non-ribosomal peptide synthetase	91.8	32.3	37.0
MGA_2235	LOCUS_22210	sequence02:2235562..2235954(-)	partial			WP_024119983.1	type II toxin-antitoxin system VapC family toxin	58.5	58.0	47.4
MGA_2238	LOCUS_22240	sequence02:2236890..2237408(+)	partial			WP_003412932.1	hypothetical protein	88.4	56.9	66.4
MGA_2241	LOCUS_22270	sequence02:2239445..2240371(+)	partial			WP_003414694.1	DNA-processing protein DprA	87.7	67.9	68.1
MGA_2242	LOCUS_22280	sequence02:2240284..2240811(+)	partial			WP_011728393.1	lactate 2-monooxygenase	99.4	45.0	79.9
MGA_2244	LOCUS_22300	sequence02:2241740..2242108(+)	partial			WP_011728396.1	alpha/beta hydrolase	97.5	40.6	63.9
MGA_2245	LOCUS_22310	sequence02:2242117..2242470(+)	partial			WP_003414694.1	DNA-processing protein DprA	98.3	29.6	70.4
MGA_2248	LOCUS_22340	sequence02:2243972..2244490(+)	partial			WP_011728393.1	lactate 2-monooxygenase	94.2	41.9	75.3
MGA_2249	LOCUS_22350	sequence02:2244490..2244963(+)	partial			WP_011728396.1	alpha/beta hydrolase	97.5	54.3	56.6
MGA_2251	LOCUS_22370	sequence02:2245629..2246114(-)	partial			WP_003414678.1	M23 family metallopeptidase	92.5	60.6	76.8
MGA_2298	LOCUS_22840	sequence02:2293089..2293859(+)	frameshift,internal_stop_codon	2293377..2293379(+)	2293505,2293007,2293391	WP_012296639.1	translation initiation factor IF-2	19.9	5.6	98.0
MGA_2299	LOCUS_22850	sequence02:2293778..2295610(+)	partial			WP_012296639.1	translation initiation factor IF-2	99.8	66.8	93.6
MGA_2309	LOCUS_22950	sequence02:2301871..2302665(+)	partial			WP_005074687.1	DUF5642 family protein	72.3	82.8	32.7
MGA_2324	LOCUS_23100	sequence02:2317137..2317385(+)	frameshift		2317322,2317627,2317407	WP_013224352.1	CaiB/BaiF CoA-transferase family protein	73.2	16.9	54.7
MGA_2342	LOCUS_23280	sequence02:2336223..2337164(+)	partial			WP_013230180.1	SDR family oxidoreductase	97.4	54.5	39.2
MGA_2344	LOCUS_23300	sequence02:2338276..2339280(+)	partial			WP_005112872.1	alpha/beta hydrolase fold domain-containing protein	68.9	66.9	38.8
MGA_2354	LOCUS_23400	sequence02:2344199..2344519(+)	partial			WP_011728515.1	hypothetical protein	85.8	59.5	53.8
MGA_2363	LOCUS_23490	sequence02:2353591..2354250(+)	partial			WP_013528496.1	TetR/AcrR family transcriptional regulator	29.7	26.6	41.5
MGA_2370	LOCUS_23560	sequence02:2360796..2361350(-)	frameshift		2361342	WP_188683277.1	IS5 family transposase	98.4	62.1	58.5
MGA_2371	LOCUS_23570	sequence02:2361298..2361717(-)	frameshift		2361342	WP_188683277.1	IS5 family transposase	84.9	38.2	74.6
MGA_2372	LOCUS_23580	sequence02:2361730..2362074(-)	partial			WP_011727799.1	FAD-dependent monooxygenase	99.1	21.2	55.8
MGA_2384	LOCUS_23700	sequence02:2372051..2372263(-)	partial			WP_003414045.1	Rv2750 family mycofactocin-dependent SDR oxidoreductase	75.7	19.5	83.0
MGA_2398	LOCUS_23840	sequence02:2385686..2385865(-)	partial			WP_011728535.1	glycosyltransferase	98.3	14.9	55.2
MGA_2423	LOCUS_24080	sequence02:2410328..2410591(+)	frameshift		2410242	WP_011728555.1	LysM peptidoglycan-binding domain-containing protein	100.0	47.6	58.0
MGA_2443	LOCUS_24280	sequence02:2425573..2425887(+)	partial			WP_011728566.1	dUTP diphosphatase	86.5	58.4	87.8
MGA_2458	LOCUS_24430	sequence02:2440244..2441089(-)	frameshift		2441202	WP_211285741.1	IS3 family transposase	100.0	73.2	86.5
MGA_2471	LOCUS_24560	sequence02:2450295..2451371(+)	partial			WP_003403850.1	phosphoglycerate mutase PE_PGRS11	86.3	49.5	35.6
MGA_2484	LOCUS_24690	sequence02:2462927..2464603(-)	partial			WP_003911742.1	alpha/beta hydrolase	64.0	56.2	27.3
MGA_2503	LOCUS_24880	sequence02:2479781..2480071(+)	frameshift		2479954	WP_010907729.1	NUDIX domain-containing protein	37.5	10.3	88.9
MGA_2504	LOCUS_24890	sequence02:2480031..2480765(+)	frameshift		2479954	WP_010907729.1	NUDIX domain-containing protein	96.3	67.6	65.7
MGA_2510	LOCUS_24950	sequence02:2485577..2486029(+)	partial			WP_003413464.1	YebC/PmpR family DNA-binding transcriptional regulator	98.7	59.0	88.5
MGA_2514	LOCUS_24990	sequence02:2489544..2490755(+)	frameshift		2490680,2490732	WP_003402284.1	PPE family protein	71.5	56.9	47.0
MGA_2515	LOCUS_25000	sequence02:2490752..2491171(+)	frameshift		2490689	WP_010950539.1	PPE family protein	87.1	23.2	28.6
MGA_2520	LOCUS_25050	sequence02:2494796..2496151(+)	frameshift		2494829,2496095	WP_003892036.1	type VII secretion protein EccB	95.6	83.4	64.7
MGA_2521	LOCUS_25060	sequence02:2496171..2496449(+)	frameshift,internal_stop_codon	2496149..2496151(+)	2496154	WP_010908949.1	type VII secretion protein EccB	82.6	14.5	61.2
MGA_2522	LOCUS_25070	sequence02:2496446..2499169(+)	partial			WP_003401478.1	type VII secretion system ESX-3 FtsK/SpoIIIE family ATPase EccC3	98.3	66.7	75.1
MGA_2523	LOCUS_25080	sequence02:2499121..2501037(+)	partial			WP_003916637.1	type VII secretion system ESX-3 FtsK/SpoIIIE family ATPase EccC3	76.0	37.4	76.3
MGA_2531	LOCUS_25160	sequence02:2510739..2511638(-)	frameshift		2511649	WP_145764452.1	IS3 family transposase	97.7	75.1	56.4
MGA_2532	LOCUS_25170	sequence02:2511635..2511967(-)	frameshift		2511652	WP_172463354.1	IS3 family transposase	95.5	24.2	47.6
MGA_2533	LOCUS_25180	sequence02:2512079..2512960(+)	partial			WP_011030832.1	DUF2252 domain-containing protein	100.0	63.1	52.4
MGA_2537	LOCUS_25220	sequence02:2515304..2515588(+)	partial			WP_003413177.1	hypothetical protein	76.6	63.7	43.0
MGA_2541	LOCUS_25260	sequence02:2518048..2519043(+)	frameshift		2518764	WP_011728723.1	protein translocase subunit SecD	40.8	21.8	81.5
MGA_2542	LOCUS_25270	sequence02:2518929..2520074(+)	frameshift		2518764	WP_003413385.1	protein translocase subunit SecD	92.4	61.4	79.8
MGA_2545	LOCUS_25300	sequence02:2523166..2523534(+)	frameshift		2523176	WP_005082386.1	adenine phosphoribosyltransferase	96.7	66.7	68.6
MGA_2551	LOCUS_25360	sequence02:2529029..2529646(+)	partial			WP_003413352.1	membrane protein	51.7	68.8	69.8
MGA_2561	LOCUS_25460	sequence02:2535997..2537100(-)	partial			WP_077741794.1	hypothetical protein	77.4	72.1	39.4
MGA_2564	LOCUS_25490	sequence02:2539438..2539866(-)	partial			WP_005062106.1	transglycosylase family protein	63.4	58.7	72.2
MGA_2568	LOCUS_25530	sequence02:2543700..2544773(-)	partial			WP_003403850.1	phosphoglycerate mutase PE_PGRS11	83.8	48.1	39.9
MGA_2569	LOCUS_25540	sequence02:2545055..2545219(+)	partial			WP_003413208.1	secondary thiamine-phosphate synthase enzyme YjbQ	88.9	37.2	77.1
MGA_2579	LOCUS_25630	sequence02:2554862..2555632(-)	partial			WP_003412998.1	B-4DMT family transporter	63.7	70.9	52.1
MGA_2584	LOCUS_25680	sequence02:2561684..2562268(+)	partial			WP_003856453.1	exonuclease domain-containing protein	85.1	35.5	40.4
MGA_2599	LOCUS_25830	sequence02:2577210..2577920(-)	partial			WP_003898852.1	class I SAM-dependent methyltransferase	61.0	67.9	61.1
MGA_2611	LOCUS_25950	sequence02:2589761..2590732(+)	partial			WP_011124322.1	15-cis-phytoene desaturase	91.6	64.2	22.0
MGA_2614	LOCUS_25980	sequence02:2592837..2593982(-)	internal_stop_codon	2594001..2594003(-)		WP_003407257.1	NAD(P)/FAD-dependent oxidoreductase	96.9	75.0	78.6
MGA_2615	LOCUS_25990	sequence02:2594001..2594339(-)	internal_stop_codon	2594001..2594003(-)		WP_003407257.1	NAD(P)/FAD-dependent oxidoreductase	96.4	22.0	87.0
MGA_2619	LOCUS_26030	sequence02:2596432..2597790(-)	partial			WP_003911742.1	alpha/beta hydrolase	77.0	57.3	42.6
MGA_2623	LOCUS_26070	sequence02:2601907..2602596(-)	partial			WP_003417421.1	PDZ-interacting protease regulator Ppr1	69.4	62.3	46.0
MGA_2629	LOCUS_26130	sequence02:2609749..2610633(-)	frameshift		2610658	WP_003408416.1	PPE family protein	99.7	77.1	32.2
MGA_2665	LOCUS_26490	sequence02:2651244..2652488(+)	frameshift		2652467,2652485,2652611	WP_003402284.1	PPE family protein	74.9	55.4	41.5
MGA_2669	LOCUS_26530	sequence02:2653846..2654403(+)	frameshift,internal_stop_codon	2653745..2653747(+)	2653741	WP_003900341.1	hypothetical protein	100.0	84.7	40.3
MGA_2707	LOCUS_26910	sequence02:2690185..2690697(-)	partial			WP_086672051.1	nitroreductase family deazaflavin-dependent oxidoreductase	52.9	67.7	50.0
MGA_2719	LOCUS_27020	sequence02:2704992..2712677(+)	partial			WP_003414837.1	phthiocerol type I polyketide synthase PpsC	50.1	60.8	45.3
MGA_2721	LOCUS_27040	sequence02:2717484..2717771(+)	partial			WP_003901187.1	fatty-acid--AMP ligase FAAL25/FadD25	70.5	11.5	59.7
MGA_2722	LOCUS_27050	sequence02:2717812..2723130(+)	partial			WP_010908854.1	type I polyketide synthase	79.7	66.7	46.4
MGA_2730	LOCUS_27130	sequence02:2736590..2737336(+)	partial			WP_010932617.1	5,6-dimethylbenzimidazole synthase	72.2	78.3	27.3
MGA_2743	LOCUS_27260	sequence02:2754723..2755613(+)	partial			WP_010950605.1	PPE family protein	42.9	20.0	33.6
MGA_2752	LOCUS_27340	sequence02:2764346..2764927(+)	partial			WP_223495573.1	signal peptidase II	80.3	69.2	80.6
MGA_2761	LOCUS_27430	sequence02:2775080..2775280(+)	frameshift		2775056	WP_083132908.1	fatty acid--CoA ligase FadD11	78.8	8.6	76.9
MGA_2769	LOCUS_27510	sequence02:2782749..2782907(+)	partial			WP_011728880.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	100.0	12.0	67.3
MGA_2810	LOCUS_27920	sequence02:2819569..2820135(-)	partial			WP_220096343.1	DUF4190 domain-containing protein	67.0	51.3	32.8
MGA_2826	LOCUS_28080	sequence02:2835037..2835753(+)	partial			WP_003895335.1	DUF4333 domain-containing protein	52.1	46.5	65.4
MGA_2848	LOCUS_28300	sequence02:2853557..2853907(-)	partial			WP_011029650.1	DoxX family protein	85.3	72.8	44.4
MGA_2859	LOCUS_28410	sequence02:2865956..2866444(-)	partial			WP_014877829.1	hypothetical protein	64.8	56.0	38.9
MGA_2879	LOCUS_28610	sequence02:2886180..2886608(-)	partial			WP_010875932.1	hypothetical protein	51.4	44.6	37.0
MGA_2882	LOCUS_28640	sequence02:2891829..2892374(+)	partial			WP_011729330.1	translation initiation factor IF-3	83.4	73.3	90.7
MGA_2890	LOCUS_28710	sequence02:2898451..2899914(+)	partial			WP_044511680.1	phenylalanine--tRNA ligase subunit beta	97.9	58.1	74.9
MGA_2891	LOCUS_28720	sequence02:2899932..2901077(+)	partial			WP_003408148.1	phenylalanine--tRNA ligase subunit beta	99.2	45.6	73.6
MGA_2930	LOCUS_29110	sequence02:2947751..2948083(+)	frameshift		2948053	WP_011729401.1	hypothetical protein	88.2	53.5	47.0
MGA_2950	LOCUS_29310	sequence02:2965137..2965868(+)	frameshift		2965135	WP_003411110.1	hypothetical protein	99.2	69.6	66.3
MGA_2958	LOCUS_29390	sequence02:2972746..2972979(-)	frameshift		2973020	WP_005110627.1	FtsK/SpoIIIE domain-containing protein	85.7	13.7	62.1
MGA_2960	LOCUS_29410	sequence02:2973491..2974336(+)	frameshift		2973377	WP_211285741.1	IS3 family transposase	100.0	73.2	87.2
MGA_2969	LOCUS_29500	sequence02:2982580..2983773(+)	partial			WP_004551580.1	aromatic ring-hydroxylating dioxygenase subunit alpha	50.4	50.1	29.9
MGA_2970	LOCUS_29510	sequence02:2983776..2984834(+)	partial			WP_003409714.1	FAD-binding oxidoreductase	94.3	39.3	36.0
MGA_2985	LOCUS_29660	sequence02:3000777..3002141(+)	partial			WP_010884099.1	hypothetical protein	74.4	75.4	33.4
MGA_2991	LOCUS_29720	sequence02:3005784..3006101(-)	partial			WP_209912946.1	IS481 family transposase	85.7	22.6	61.1
MGA_2997	LOCUS_29780	sequence02:3009963..3010430(-)	partial			WP_081160261.1	HAD family hydrolase	97.4	48.2	46.9
MGA_2998	LOCUS_29790	sequence02:3010415..3010957(-)	partial			WP_018642187.1	HAD family hydrolase	87.2	44.1	43.0
MGA_3002	LOCUS_29830	sequence02:3017541..3018230(+)	partial			WP_003411129.1	phosphoribosyltransferase family protein	99.1	64.8	64.5
MGA_3003	LOCUS_29840	sequence02:3018227..3018562(-)	partial			WP_003411130.1	hypothetical protein	36.9	34.7	87.8
MGA_3005	LOCUS_29860	sequence02:3019932..3020711(+)	partial			WP_015776328.1	DUF2249 domain-containing protein	31.7	78.1	50.0
MGA_3035	LOCUS_30160	sequence02:3052846..3053142(-)	partial			WP_003411344.1	hypothetical protein	87.8	64.1	55.2
MGA_3061	LOCUS_30420	sequence02:3090341..3090661(-)	frameshift		3090671	WP_003411405.1	MmpS family transport accessory protein	89.6	31.8	73.7
MGA_3070	LOCUS_30510	sequence02:3098541..3099002(+)	partial			WP_162618317.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	76.5	31.8	66.7
MGA_3071	LOCUS_30520	sequence02:3099002..3099430(+)	partial			WP_011729695.1	adenosylcobinamide-GDP ribazoletransferase	90.8	53.5	63.6
MGA_3076	LOCUS_30570	sequence02:3103101..3103949(+)	partial			WP_003899220.1	leucyl aminopeptidase	96.5	52.8	86.4
MGA_3078	LOCUS_30590	sequence02:3105102..3105503(+)	partial			WP_011729702.1	2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase	65.4	15.0	87.5
MGA_3086	LOCUS_30670	sequence02:3111826..3113223(+)	partial			WP_003401003.1	PE-PPE domain-containing protein	79.1	71.2	47.6
MGA_3088	LOCUS_30690	sequence02:3113901..3114401(-)	frameshift		3114627,3114621	WP_003411478.1	bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase	99.4	16.6	83.0
MGA_3089	LOCUS_30700	sequence02:3114346..3116862(-)	frameshift		3114627,3114621	WP_003411478.1	bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase	89.4	74.5	67.8
MGA_3097	LOCUS_30780	sequence02:3126633..3127286(-)	frameshift,internal_stop_codon	3127283..3127285(-)	3127264	WP_011729718.1	NAD(P)/FAD-dependent oxidoreductase	93.1	39.0	54.0
MGA_3098	LOCUS_30790	sequence02:3127283..3128242(-)	frameshift,internal_stop_codon	3127283..3127285(-)	3127264	WP_011729718.1	NAD(P)/FAD-dependent oxidoreductase	97.5	59.5	60.6
MGA_3141	LOCUS_31220	sequence02:3165503..3166642(+)	partial			WP_003403850.1	phosphoglycerate mutase PE_PGRS11	81.8	49.1	40.3
MGA_3143	LOCUS_31240	sequence02:3168463..3169128(+)	frameshift		3168457	WP_011729742.1	diacylglycerol kinase	96.8	71.3	77.1
MGA_3165	LOCUS_31460	sequence02:3193343..3194437(+)	partial			WP_010950514.1	serine/threonine-protein kinase PknH/PknJ	92.3	57.0	50.4
MGA_3166	LOCUS_31470	sequence02:3194440..3194970(+)	frameshift		3194320	WP_005088797.1	hypothetical protein	100.0	58.5	46.6
MGA_3167	LOCUS_31480	sequence02:3195078..3196118(+)	partial			WP_011727224.1	MPT63 family protein	56.9	54.5	49.5
MGA_3168	LOCUS_31490	sequence02:3196608..3196952(+)	frameshift		3196409,3196433	WP_005097886.1	MPT63 family protein	97.4	33.2	35.1
MGA_3181	LOCUS_31620	sequence02:3207144..3207914(-)	partial			WP_003143427.1	MerR family transcriptional regulator	70.7	76.3	28.6
MGA_3185	LOCUS_31660	sequence02:3211236..3212228(-)	partial			WP_005098458.1	alpha/beta hydrolase fold domain-containing protein	92.7	44.2	50.3
MGA_3189	LOCUS_31700	sequence02:3217177..3217935(+)	partial			WP_003401003.1	PE-PPE domain-containing protein	77.4	40.4	29.1
MGA_3209	LOCUS_31900	sequence02:3234199..3235218(-)	frameshift		3234276,3234312,3234282,3234315,3234285,3234318,3234288,3234327,3234330,3234300,3234303	WP_011727252.1	hypothetical protein	21.5	5.8	41.9
MGA_3221	LOCUS_32020	sequence02:3246422..3246733(+)	partial			WP_013226285.1	AfsR/SARP family transcriptional regulator	65.0	9.5	40.3
MGA_3253	LOCUS_32330	sequence02:3276321..3276635(+)	frameshift		3276279	WP_003407779.1	MMPL family transporter	76.9	8.3	63.8
MGA_3275	LOCUS_32550	sequence02:3299203..3299526(-)	partial			WP_005060209.1	50S ribosomal protein L21	74.8	77.7	93.8
MGA_3276	LOCUS_32560	sequence02:3299645..3301501(-)	frameshift		3301685	WP_010908354.1	Rne/Rng family ribonuclease	84.5	55.5	80.5
MGA_3278	LOCUS_32580	sequence02:3301647..3302492(-)	frameshift		3301703	WP_003899322.1	Rne/Rng family ribonuclease	44.8	12.9	61.7
MGA_3287	LOCUS_32670	sequence02:3311064..3311441(-)	partial			WP_011729980.1	molybdenum cofactor guanylyltransferase	80.0	51.3	53.0
MGA_3299	LOCUS_32790	sequence02:3323674..3323838(-)	partial			WP_011730011.1	DsbA family protein	83.3	22.3	77.8
MGA_3302	LOCUS_32820	sequence02:3326924..3327679(-)	partial			WP_011728045.1	type VII secretion target	94.0	64.7	45.9
MGA_3314	LOCUS_32940	sequence02:3340487..3341026(-)	partial			WP_010907795.1	LppX_LprAFG lipoprotein	98.9	74.8	43.3
MGA_3357	LOCUS_33370	sequence02:3387031..3387306(-)	frameshift		3387344	WP_010950731.1	carboxyl transferase domain-containing protein	100.0	17.2	85.7
MGA_3359	LOCUS_33380	sequence02:3388109..3388570(-)	frameshift		3388252	WP_010950731.1	carboxyl transferase domain-containing protein	72.5	21.0	78.4
MGA_3382	LOCUS_33610	sequence02:3405354..3406253(-)	frameshift		3406264	WP_145764452.1	IS3 family transposase	97.7	75.1	57.7
MGA_3383	LOCUS_33620	sequence02:3406250..3406582(-)	frameshift		3406267	WP_172463354.1	IS3 family transposase	95.5	24.2	47.6
MGA_3394	LOCUS_33730	sequence02:3413307..3413951(-)	partial			WP_003977080.1	S1 family peptidase	67.8	53.0	29.2
MGA_3408	LOCUS_33870	sequence02:3427621..3428628(+)	frameshift		3427576	WP_109559953.1	IS3 family transposase	100.0	72.1	86.3
MGA_3417	LOCUS_33960	sequence02:3435022..3436800(+)	partial			WP_009966620.1	coupling conjugation protein ConQ	31.2	35.4	31.9
MGA_3433	LOCUS_34120	sequence02:3451807..3452211(+)	partial			WP_003401636.1	hypothetical protein	94.8	57.7	66.1
MGA_3442	LOCUS_34210	sequence02:3460837..3464682(-)	frameshift		3464684	WP_003901420.1	fatty acid synthase	100.0	41.7	81.2
MGA_3443	LOCUS_34220	sequence02:3464580..3469961(-)	frameshift		3464699	WP_011730064.1	type I polyketide synthase	99.5	58.0	80.1
MGA_3455	LOCUS_34340	sequence02:3478351..3478926(-)	partial			WP_011730182.1	P1 family peptidase	94.2	52.2	62.8
MGA_3456	LOCUS_34350	sequence02:3478999..3479574(+)	partial			WP_011730182.1	P1 family peptidase	94.2	52.2	62.8
MGA_3468	LOCUS_34470	sequence02:3487964..3493360(+)	partial			WP_011730064.1	type I polyketide synthase	96.4	56.6	82.0
MGA_3477	LOCUS_34560	sequence02:3499817..3500800(+)	partial			WP_011730186.1	zinc metallopeptidase LpqM	99.7	67.9	67.4
MGA_3490	LOCUS_34690	sequence02:3517793..3518941(-)	partial			WP_003400998.1	PE-PPE domain-containing protein	71.7	51.4	34.2
MGA_3499	LOCUS_34780	sequence02:3537091..3537624(-)	frameshift,internal_stop_codon	3537676..3537678(-)	3537679	WP_003406697.1	F0F1 ATP synthase subunit B/delta	100.0	40.4	70.0
MGA_3500	LOCUS_34790	sequence02:3537608..3538435(-)	frameshift		3537670	WP_003896331.1	F0F1 ATP synthase subunit B/delta	94.5	58.4	57.3
MGA_3502	LOCUS_34810	sequence02:3538974..3539234(-)	partial			WP_003406686.1	F0F1 ATP synthase subunit C	58.1	61.7	94.0
MGA_3519	LOCUS_34980	sequence02:3556689..3556895(+)	frameshift		3556659	WP_003417282.1	type II toxin-antitoxin system VapC family toxin	83.8	40.1	57.9
MGA_3538	LOCUS_35170	sequence02:3575050..3578733(+)	partial			WP_010974286.1	KAP family P-loop domain protein	24.0	44.9	26.7
MGA_3541	LOCUS_35200	sequence02:3580351..3580683(+)	frameshift		3580665	WP_172463354.1	IS3 family transposase	95.5	24.2	47.6
MGA_3542	LOCUS_35210	sequence02:3580680..3581579(+)	frameshift		3580668	WP_145764452.1	IS3 family transposase	97.7	75.1	57.4
MGA_3563	LOCUS_35420	sequence02:3600143..3600724(+)	partial			WP_003403850.1	phosphoglycerate mutase PE_PGRS11	45.1	15.4	38.5
MGA_3564	LOCUS_35430	sequence02:3600688..3601440(+)	partial			WP_010886098.1	PecA family PE domain-processing aspartic protease	90.0	23.5	50.9
MGA_3569	LOCUS_35480	sequence02:3604224..3605408(-)	partial			WP_005079723.1	MarR family transcriptional regulator	60.4	81.5	29.0
MGA_3570	LOCUS_35490	sequence02:3605570..3607528(+)	partial			WP_013224715.1	hypothetical protein	44.6	66.2	28.2
MGA_3581	LOCUS_35600	sequence02:3619016..3619450(+)	frameshift		3619017	WP_003406334.1	LppP/LprE family lipoprotein	90.3	63.9	73.1
MGA_3613	LOCUS_35920	sequence02:3655597..3659169(+)	partial			WP_003403850.1	phosphoglycerate mutase PE_PGRS11	4.8	9.8	42.1
MGA_3615	LOCUS_35940	sequence02:3660143..3660814(+)	partial			WP_014876908.1	DUF2599 domain-containing protein	47.5	77.4	51.9
MGA_3621	LOCUS_36000	sequence02:3666802..3667113(-)	partial			WP_010908107.1	DivIVA domain-containing protein	75.7	68.4	78.2
MGA_3638	LOCUS_36170	sequence02:3685491..3686945(-)	partial			WP_003901256.1	PPE family protein	94.4	70.7	39.2
MGA_3641	LOCUS_36200	sequence02:3689350..3690048(+)	partial			WP_003854724.1	HNH endonuclease family protein	78.0	69.8	62.4
MGA_3646	LOCUS_36250	sequence02:3696592..3697023(-)	partial			WP_003406163.1	hypothetical protein	74.8	73.3	58.9
MGA_3696	LOCUS_36750	sequence02:3743125..3743454(-)	partial			WP_011026878.1	MerR family transcriptional regulator	96.3	40.0	43.6
MGA_3711	LOCUS_36900	sequence02:3758713..3759405(+)	frameshift		3758701	WP_003898734.1	hypothetical protein	99.1	79.7	75.9
MGA_3721	LOCUS_37000	sequence02:3765821..3766786(+)	frameshift		3766396,3766630	WP_014878271.1	hypothetical protein	88.2	65.2	41.6
MGA_3736	LOCUS_37150	sequence02:3780093..3781496(+)	partial			WP_003901256.1	PPE family protein	96.6	72.4	41.0
MGA_3745	LOCUS_37240	sequence02:3789379..3790341(-)	frameshift		3790420,3790445	WP_011730421.1	hypothetical protein	99.7	69.6	72.4
MGA_3746	LOCUS_37250	sequence02:3790326..3790733(-)	frameshift		3790420,3790445	WP_011730421.1	hypothetical protein	66.7	19.8	63.3
MGA_3759	LOCUS_37380	sequence02:3801235..3801711(-)	partial			WP_010908871.1	RDD family protein	97.5	63.5	60.1
MGA_3770	LOCUS_37480	sequence02:3809217..3809597(-)	partial			WP_088057164.1	recombinase family protein	86.5	60.1	37.3
MGA_3778	LOCUS_37560	sequence02:3815499..3816524(+)	frameshift		3815898,3815917,3815846	WP_012296244.1	rep protein	65.7	59.5	51.8
MGA_3780	LOCUS_37580	sequence02:3817586..3818275(+)	partial			WP_003409874.1	hypothetical protein	84.3	65.0	29.4
MGA_3784	LOCUS_37620	sequence02:3821300..3821911(-)	partial			WP_029104481.1	alpha/beta hydrolase	99.5	55.9	62.4
MGA_3800	LOCUS_37780	sequence02:3840856..3841125(-)	frameshift		3841154	WP_003405865.1	type II toxin-antitoxin system VapC family toxin	98.9	71.0	69.3
MGA_3804	LOCUS_37810	sequence02:3842464..>3843338(-)	partial			WP_003896814.1	phosphopyruvate hydratase	97.9	66.5	91.2
MGA_3806	LOCUS_37820	sequence03:113..1123(-)	partial			WP_003903979.1	recombinase family protein	99.7	71.4	31.2
MGA_3811	LOCUS_37860	sequence03:4702..5886(-)	partial			WP_003903979.1	recombinase family protein	78.7	66.1	29.7
MGA_3812	LOCUS_37870	sequence03:5883..6101(-)	partial			WP_003903979.1	recombinase family protein	77.8	11.9	57.1
MGA_3813	LOCUS_37880	sequence03:6281..6517(-)	partial			WP_003410095.1	HNH endonuclease signature motif containing protein	80.8	15.1	63.5
MGA_3829	LOCUS_38040	sequence03:18602..19705(+)	frameshift		19660	WP_003413686.1	ACR3 family arsenite efflux transporter	96.2	70.9	79.9
MGA_3830	LOCUS_38050	sequence03:19698..20120(+)	frameshift		19660	WP_003413686.1	ACR3 family arsenite efflux transporter	93.6	26.3	85.5
MGA_3833	LOCUS_38080	sequence03:21271..21978(-)	partial			WP_014878540.1	cholesterol catabolism transcriptional regulator KstR	72.8	75.7	68.0
MGA_3840	LOCUS_38150	sequence04:9504..10223(+)	frameshift		10199	WP_003408385.1	DNA repair protein RecN	99.6	40.5	72.3
MGA_3849	LOCUS_38240	sequence05:3020..5053(+)	partial			WP_003915886.1	sensor histidine kinase KdpD	93.1	74.3	66.2
MGA_3872	LOCUS_38450	sequence06:19161..19760(-)	partial			WP_003412695.1	hypothetical protein	82.4	70.6	35.7
MGA_3898	LOCUS_38710	sequence06:43754..45601(-)	partial			WP_003408979.1	type VII secretion system ESX-5 target PPE26	39.8	62.3	43.0
MGA_3925	LOCUS_38980	sequence06:71644..72315(-)	partial			WP_014878484.1	hypothetical protein	76.2	73.8	56.4
MGA_3949	LOCUS_39220	sequence06:98284..100116(+)	partial			WP_003911742.1	alpha/beta hydrolase	33.0	32.5	43.7
MGA_3979	LOCUS_39520	sequence06:126580..127518(+)	partial			WP_011727070.1	PPE family protein	56.1	33.5	63.4
MGA_3980	LOCUS_39530	sequence06:127535..128077(+)	partial			WP_010950539.1	PPE family protein	70.0	24.5	34.5
MGA_3990	LOCUS_39630	sequence06:136416..137366(+)	partial			WP_003403850.1	phosphoglycerate mutase PE_PGRS11	90.2	49.1	46.2
MGA_3991	LOCUS_39640	sequence06:137388..137624(+)	partial			WP_010908523.1	LuxR family transcriptional regulator	97.4	6.9	60.5
MGA_3994	LOCUS_39670	sequence06:141255..142220(-)	partial			WP_003419325.1	fatty acid desaturase	96.3	44.1	51.1
MGA_3995	LOCUS_39680	sequence06:142325..143332(-)	frameshift		143376	WP_109559953.1	IS3 family transposase	100.0	72.1	87.5
MGA_4066	LOCUS_40380	sequence06:220233..220997(-)	internal_stop_codon	220233..220235(-)		WP_011731024.1	hypothetical protein	80.7	81.2	68.4
MGA_4081	LOCUS_40530	sequence06:234992..235615(-)	frameshift,internal_stop_codon	234992..234994(-)	234994,234870	WP_003899595.1	hypothetical protein	98.6	49.6	63.4
MGA_4116	LOCUS_40870	sequence06:271404..273842(-)	partial			WP_003911174.1	cation-translocating P-type ATPase	94.5	50.0	61.1
MGA_4117	LOCUS_40880	sequence06:273859..275817(-)	frameshift		274140,274143	WP_003904400.1	cation-translocating P-type ATPase	84.5	36.4	48.3
MGA_4122	LOCUS_40930	sequence06:280731..283388(+)	partial			WP_011731067.1	non-ribosomal peptide synthetase	100.0	67.1	70.3
MGA_4173	LOCUS_41440	sequence06:334132..335124(+)	frameshift		334145	WP_003899640.1	hypothetical protein	98.2	73.2	46.4
MGA_4182	LOCUS_41530	sequence06:342194..342409(-)	internal_stop_codon	342446..342448(-)		WP_003403137.1	type II toxin-antitoxin system VapC family toxin	90.1	62.8	39.5
MGA_4185	LOCUS_41560	sequence06:342983..343405(+)	partial			WP_050039320.1	PadR family transcriptional regulator	98.6	73.4	69.6
MGA_4186	LOCUS_41570	sequence06:343409..343954(-)	partial			WP_003854724.1	HNH endonuclease family protein	100.0	70.5	53.6
MGA_4189	LOCUS_41600	sequence06:345938..347263(+)	frameshift		347185,347191	WP_005112279.1	hypothetical protein	83.7	64.3	28.0
MGA_4207	LOCUS_41780	sequence06:361624..362193(+)	frameshift		362079	WP_073167773.1	tyrosine-type recombinase/integrase	68.3	36.0	29.9
MGA_4208	LOCUS_41790	sequence06:362075..362509(+)	frameshift		362073	WP_183125562.1	tyrosine-type recombinase/integrase	81.9	23.5	34.6
MGA_4230	LOCUS_42010	sequence06:385574..386908(-)	frameshift,internal_stop_codon	385582..385584(-),385591..385593(-)	385554,385780,385599,385687	WP_011731177.1	DNA polymerase III subunits gamma/tau	84.2	56.1	87.2
MGA_4233	LOCUS_42040	sequence06:389400..390122(+)	partial			WP_003420421.1	lipid uptake coordinator LucA	67.1	63.4	50.3
MGA_4234	LOCUS_42050	sequence06:390153..391484(+)	partial			WP_005090204.1	hypothetical protein	69.1	54.2	30.7
MGA_4246	LOCUS_42170	sequence06:403499..404026(+)	partial			WP_014877718.1	DUF5078 domain-containing protein	72.0	84.7	59.8
MGA_4270	LOCUS_42400	sequence06:431541..431864(+)	partial			WP_003410762.1	DUF4333 domain-containing protein	71.0	31.1	59.2
MGA_4294	LOCUS_42640	sequence06:451577..452563(-)	partial			WP_179943937.1	TerC/Alx family metal homeostasis membrane protein	93.3	69.0	56.1
MGA_4301	LOCUS_42700	sequence06:456981..458483(+)	partial			WP_003901256.1	PPE family protein	91.4	66.9	38.6
MGA_4305	LOCUS_42740	sequence06:461004..461420(-)	frameshift		461072	WP_003400961.1	TetR/AcrR family transcriptional regulator	79.0	39.3	45.5
MGA_4312	LOCUS_42810	sequence06:465619..466158(+)	partial			WP_010940338.1	VOC family protein	77.7	67.0	35.7
MGA_4336	LOCUS_43050	sequence06:488693..490192(+)	partial			WP_010950653.1	alpha/beta hydrolase	38.1	30.0	38.4
MGA_4337	LOCUS_43060	sequence06:490189..490494(+)	partial			WP_011727515.1	hypothetical protein	68.3	67.0	42.0
MGA_4338	LOCUS_43070	sequence06:490985..491362(+)	partial			WP_010950962.1	hypothetical protein	64.8	57.7	55.2
MGA_4341	LOCUS_43100	sequence06:493524..495041(+)	frameshift,internal_stop_codon	495104..495106(+),495040..495042(+)	495168,494819,494756,495078,494123,494828,494765,495024,494643,495251,494742,495067,495229	WP_010950655.1	DUF5631 domain-containing protein	48.3	34.3	35.1
MGA_4342	LOCUS_43110	sequence06:494978..495520(+)	partial			WP_003900778.1	DUF5632 domain-containing protein	98.3	43.2	52.2
MGA_4347	LOCUS_43160	sequence06:498109..499116(-)	partial			WP_010950435.1	DUF4226 domain-containing protein	34.9	42.2	40.3
MGA_4358	LOCUS_43270	sequence06:511518..511982(+)	partial			WP_003400012.1	type VII secretion system ESX-2 serine protease mycosin MycP2	87.0	24.4	79.9
MGA_4362	LOCUS_43310	sequence06:515845..517317(-)	partial			WP_003400411.1	DUF5631 domain-containing protein	42.9	56.4	57.1
MGA_4375	LOCUS_43440	sequence06:528311..529036(-)	frameshift		529164	WP_005111128.1	NAD(P)-binding domain-containing protein	92.5	50.7	77.6
MGA_4376	LOCUS_43450	sequence06:529066..529674(-)	frameshift		529164	WP_005111128.1	NAD(P)-binding domain-containing protein	84.2	38.6	74.1
MGA_4406	LOCUS_43740	sequence06:559433..559756(+)	partial			WP_011731645.1	membrane protein insertion efficiency factor YidD	70.1	65.2	81.3
MGA_4410	LOCUS_43780	sequence06:561667..562266(+)	frameshift		562218	WP_036454143.1	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	98.5	82.4	66.0
MGA_4417	LOCUS_43850	sequence06:568418..568927(-)	partial			WP_003400148.1	anti-sigma-M factor RsmA	94.1	63.8	44.8
MGA_4421	LOCUS_43890	sequence06:575360..575929(-)	partial			WP_003400124.1	NUDIX domain-containing protein	97.4	73.4	80.4
MGA_4427	LOCUS_43950	sequence06:581149..581598(-)	partial			WP_011731628.1	hypothetical protein	57.7	70.5	40.7
MGA_4440	LOCUS_44080	sequence06:594937..597015(+)	frameshift		596805	WP_031651598.1	transglycosylase/D,D-transpeptidase PonA1	89.0	75.1	79.8
MGA_4442	LOCUS_44100	sequence06:599512..600960(+)	frameshift		599392	WP_011731615.1	glycosyltransferase family 87 protein	96.7	83.0	68.7
MGA_4443	LOCUS_44110	sequence06:601117..607629(+)	partial			WP_010950502.1	type I polyketide synthase	55.2	56.9	58.5
MGA_4454	LOCUS_44220	sequence06:619678..620406(+)	partial			WP_010950644.1	DEAD/DEAH box helicase	97.5	14.8	77.6
MGA_4456	LOCUS_44240	sequence06:622722..623621(-)	frameshift		623632	WP_145764452.1	IS3 family transposase	97.7	75.1	57.0
MGA_4457	LOCUS_44250	sequence06:623618..623950(-)	frameshift		623635	WP_172463354.1	IS3 family transposase	95.5	24.2	47.6
MGA_4468	LOCUS_44360	sequence06:633620..635008(-)	partial			WP_011227911.1	ATP-dependent zinc metalloprotease FtsH	37.7	30.3	33.7
MGA_4472	LOCUS_44400	sequence06:638340..638732(-)	partial			WP_005098598.1	serine hydrolase domain-containing protein	27.7	7.3	75.0
MGA_4485	LOCUS_44530	sequence06:651243..652319(-)	partial			WP_010950605.1	PPE family protein	47.8	27.3	29.4
MGA_4488	LOCUS_44560	sequence06:653255..654229(+)	partial			WP_010950605.1	PPE family protein	66.4	32.4	29.7
MGA_4492	LOCUS_44600	sequence06:657293..660691(+)	frameshift		660394	WP_193484145.1	type I polyketide synthase	82.2	45.6	50.7
MGA_4493	LOCUS_44610	sequence06:660676..664572(+)	partial			WP_193484145.1	type I polyketide synthase	58.9	38.2	40.2
MGA_4494	LOCUS_44620	sequence06:664617..670982(+)	partial			WP_011026868.1	type I polyketide synthase	34.0	32.9	50.7
MGA_4505	LOCUS_44730	sequence06:680141..680461(-)	partial			WP_003409188.1	DUF732 domain-containing protein	70.8	63.6	50.7
MGA_4531	LOCUS_44990	sequence06:711176..711793(+)	partial			WP_005069195.1	TetR/AcrR family transcriptional regulator	52.7	43.0	36.6
MGA_4532	LOCUS_45000	sequence06:711929..713389(+)	partial			WP_003901256.1	PPE family protein	96.3	72.2	40.2
MGA_4556	LOCUS_45240	sequence06:743638..744108(+)	partial			WP_014878054.1	TetR/AcrR family transcriptional regulator	93.6	73.4	56.2
MGA_4559	LOCUS_45270	sequence06:745839..746066(-)	frameshift		746125	WP_011731283.1	TetR/AcrR family transcriptional regulator	96.0	33.2	73.6
MGA_4560	LOCUS_45280	sequence06:746033..746473(-)	frameshift		746125	WP_011731283.1	TetR/AcrR family transcriptional regulator	76.7	52.5	66.7
MGA_4562	LOCUS_45300	sequence06:748019..748393(-)	frameshift,internal_stop_codon	748390..748392(-)	748377	WP_011728103.1	YggS family pyridoxal phosphate-dependent enzyme	95.2	47.2	60.5
MGA_4563	LOCUS_45310	sequence06:748390..748773(-)	frameshift,internal_stop_codon	748390..748392(-)	748377	WP_003807283.1	YggS family pyridoxal phosphate-dependent enzyme	88.2	43.2	58.9
MGA_4567	LOCUS_45350	sequence06:750375..751052(-)	partial			WP_013222045.1	YcnI family protein	65.8	65.1	32.3
MGA_4575	LOCUS_45430	sequence06:756702..757442(+)	frameshift		757277	WP_003420924.1	glycerophosphodiester phosphodiesterase	74.4	65.3	69.9
MGA_4577	LOCUS_45450	sequence06:758192..759100(-)	partial			WP_235624060.1	LCP family protein	97.7	68.9	64.4
MGA_4606	LOCUS_45730	sequence06:788978..789829(-)	internal_stop_codon	788978..788980(-)		WP_003420801.1	exported repetitive protein	29.0	34.5	59.2
MGA_4617	LOCUS_45840	sequence06:804262..805503(+)	frameshift		805356	WP_014878634.1	polyketide synthase Pks13	85.7	19.2	78.5
MGA_4618	LOCUS_45850	sequence06:805415..809473(+)	frameshift		805356	WP_010907524.1	polyketide synthase Pks13	100.0	75.4	68.1
MGA_4627	LOCUS_45940	sequence06:827416..827964(+)	partial			WP_003412695.1	hypothetical protein	86.8	69.3	41.3
MGA_4669	LOCUS_46280	sequence13:3002..3388(-)	partial			WP_011729344.1	thioesterase family protein	96.1	43.5	63.4
MGA_4673	LOCUS_46300	sequence15:488..1630(-)	partial			WP_003898806.1	AAA family ATPase	98.2	42.9	56.8
MGA_4676	LOCUS_46310	sequence17:5..>988(-)	partial			WP_011728865.1	DNA polymerase IV	98.2	69.5	72.9
MGA_4680	LOCUS_46330	sequence19:102..698(+)	partial			WP_010950605.1	PPE family protein	77.3	24.3	30.1
MGA_4694	LOCUS_46420	sequence23:2152..>2883(-)	partial			WP_011730829.1	Dyp-type peroxidase	99.2	71.1	65.2
MGA_4695	LOCUS_46430	sequence24:205..2199(+)	partial			WP_010979815.1	YncE family protein	48.2	75.2	31.7
MGA_4696	LOCUS_46440	sequence24:2307..3461(-)	partial			WP_004528841.1	S53 family peptidase	93.5	69.9	55.1
MGA_4699	LOCUS_46460	sequence26:3..317(+)	partial			WP_003413464.1	YebC/PmpR family DNA-binding transcriptional regulator	100.0	41.4	86.5
MGA_4701	LOCUS_46480	sequence26:1165..1662(+)	partial			WP_011030832.1	DUF2252 domain-containing protein	84.2	29.6	64.0
MGA_4702	LOCUS_46490	sequence27:1..605(+)	partial			WP_164928895.1	fatty acyl-AMP ligase	81.0	28.3	43.4
MGA_4709	LOCUS_46530	sequence29:80..>844(-)	partial			WP_029104330.1	ATP-dependent DNA ligase	98.8	73.2	70.0
MGA_4713	LOCUS_46550	sequence31:1542..2555(+)	frameshift		1946	WP_003897770.1	MarR family transcriptional regulator	38.6	76.5	45.4
MGA_4719	LOCUS_46590	sequence33:1..638(+)	partial			WP_013389782.1	site-specific integrase	83.4	65.5	33.3
MGA_4722	LOCUS_46620	sequence33:2216..3337(-)	partial			WP_005090114.1	hypothetical protein	20.1	74.3	50.7
MGA_4727	LOCUS_46670	sequence33:5711..7288(+)	internal_stop_codon	7286..7288(+)		WP_015775718.1	hypothetical protein	35.2	45.6	46.1
MGA_4729	LOCUS_46690	sequence33:8287..9132(-)	frameshift		9245	WP_211285741.1	IS3 family transposase	100.0	73.2	86.8
MGA_4737	LOCUS_46770	sequence33:13387..13968(-)	partial			WP_003411851.1	hypothetical protein	49.2	57.3	34.7
MGA_4745	LOCUS_46840	sequence35:124..723(-)	internal_stop_codon	772..774(-)		WP_011727513.1	IS1634-like element ISMsm6 family transposase	75.9	27.7	79.5
MGA_4746	LOCUS_46850	sequence35:772..1332(-)	internal_stop_codon	772..774(-)		WP_011727513.1	IS1634-like element ISMsm6 family transposase	99.5	33.8	70.8
MGA_4747	LOCUS_46860	sequence36:1..539(+)	partial			WP_003405293.1	septum formation initiator family protein	82.6	64.5	59.9
MGA_4758	LOCUS_46930	sequence38:697..1014(+)	partial			WP_003899417.1	DUF2742 domain-containing protein	93.3	73.1	37.8
MGA_4771	LOCUS_47020	sequence41:158..>891(-)	partial			WP_003411429.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	96.7	65.1	69.4