{
    "type": "genome",
    "identifier": "GCF_900079995.3",
    "organism": "Citrobacter europaeus",
    "title": "Citrobacter europaeus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "INSTITUT PASTEUR",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900079995.3",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA3935942",
        "wgs_master": "FLYB00000000.3",
        "refseq_category": "na",
        "taxid": "1914243",
        "species_taxid": "1914243",
        "organism_name": "Citrobacter europaeus",
        "infraspecific_name": "strain=97/79",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/02/08",
        "asm_name": "ASM90007999v3",
        "asm_submitter": "INSTITUT PASTEUR",
        "gbrs_paired_asm": "GCA_900079995.3",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/079/995/GCF_900079995.3_ASM90007999v3",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5293620",
        "genome_size_ungapped": "5293620",
        "gc_percent": "52.000000",
        "replicon_count": "0",
        "scaffold_count": "36",
        "contig_count": "36",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900079995.3-RS_2024_08_20",
        "annotation_date": "2024-08-20",
        "total_gene_count": "4994",
        "protein_coding_gene_count": "4838",
        "non_coding_gene_count": "86",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-02-08",
    "dateModified": "2021-02-08",
    "datePublished": "2021-02-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Citrobacter europaeus"
        ],
        "sample_taxid": [
            "1914243"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.506 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5293620",
        "Number of Sequences": "36",
        "Longest Sequences (bp)": "803536",
        "N50 (bp)": "571932",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "51.9",
        "Number of CDSs": "4834",
        "Average Protein Length": "321.2",
        "Coding Ratio (%)": "88.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "72",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Citrobacter europaeus",
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                "accession": "GCA_900079995.3",
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                "species_taxid": 1914243,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1745,
                "total_fragments": 1748,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Citrobacter arsenatis",
                "strain": "strain=LY-1",
                "accession": "GCA_004353845.1",
                "taxid": 2546350,
                "species_taxid": 2546350,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.2626,
                "matched_fragments": 1460,
                "total_fragments": 1748,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Citrobacter braakii",
                "strain": "strain=ATCC 51113",
                "accession": "GCA_002075345.1",
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                "species_taxid": 57706,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Citrobacter braakii",
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                "accession": "GCA_019048805.1",
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                "species_taxid": 57706,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.3011,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Citrobacter portucalensis",
                "strain": "strain=A60",
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                "species_taxid": 1639133,
                "relation_to_type": "type",
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                "ani": 93.0338,
                "matched_fragments": 1402,
                "total_fragments": 1748,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Citrobacter freundii",
                "strain": "strain=NBRC 12681",
                "accession": "GCA_000759735.1",
                "taxid": 546,
                "species_taxid": 546,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.7948,
                "matched_fragments": 1404,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Citrobacter freundii",
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                "accession": "GCA_011064845.1",
                "taxid": 546,
                "species_taxid": 546,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.7812,
                "matched_fragments": 1418,
                "total_fragments": 1748,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Citrobacter pasteurii",
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                "accession": "GCA_019047765.1",
                "taxid": 1563222,
                "species_taxid": 1563222,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.045,
                "matched_fragments": 1336,
                "total_fragments": 1748,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salmonella enterica subsp. enterica",
                "strain": "strain=PartC-Senterica-RM8376",
                "accession": "GCA_022869965.1",
                "taxid": 59201,
                "species_taxid": 28901,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 82.9111,
                "matched_fragments": 1009,
                "total_fragments": 1748,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Citrobacter rodentium",
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                "accession": "GCA_021278985.1",
                "taxid": 67825,
                "species_taxid": 67825,
                "relation_to_type": "type",
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                "matched_fragments": 1047,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Escherichia fergusonii",
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                "ani": 82.0646,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Escherichia fergusonii",
                "strain": "strain=ATCC 35469T",
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                "species_taxid": 564,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0501,
                "matched_fragments": 867,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter wuhouensis",
                "strain": "strain=WCHEW120002",
                "accession": "GCA_004331265.1",
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                "status": "below_threshold"
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            {
                "organism_name": "Enterobacter hormaechei",
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                "organism_name": "Enterobacter sichuanensis",
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                "accession": "GCF_900079995.3",
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}