{ "type": "genome", "identifier": "GCF_900086595.1", "organism": "Clostridium nigeriense", "title": "Clostridium nigeriense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900086595.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3982858", "wgs_master": "FLKB00000000.1", "refseq_category": "reference genome", "taxid": "1805470", "species_taxid": "1805470", "organism_name": "Clostridium nigeriense", "infraspecific_name": "strain=Marseille-P2414T", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/06/06", "asm_name": "PRJEB13977", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_900086595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/086/595/GCF_900086595.1_PRJEB13977", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3799489", "genome_size_ungapped": "3766140", "gc_percent": "28.500000", "replicon_count": "0", "scaffold_count": "4", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900086595.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3687", "protein_coding_gene_count": "3459", "non_coding_gene_count": "188", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-06-06", "dateModified": "2016-06-06", "datePublished": "2016-06-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium nigeriense" ], "sample_taxid": [ "1805470" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], 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"ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Clostridium gallinarum", "strain": "strain=Sa3CUN1", "accession": "GCA_014836325.1", "taxid": 2762246, "species_taxid": 2762246, "relation_to_type": "type", "validated": true, "ani": 87.0708, "matched_fragments": 778, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium tertium", "strain": "strain=DSM 2485", "accession": "GCA_017873245.1", "taxid": 1559, "species_taxid": 1559, "relation_to_type": "type", "validated": true, "ani": 81.781, "matched_fragments": 735, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium chauvoei", "strain": "strain=DSM 7528", "accession": "GCA_002327185.1", "taxid": 46867, "species_taxid": 46867, "relation_to_type": "type", "validated": true, "ani": 79.644, "matched_fragments": 408, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"GCA_000320405.1", "taxid": 36834, "species_taxid": 36834, "relation_to_type": "type", "validated": true, "ani": 78.0287, "matched_fragments": 333, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium gasigenes", "strain": "strain=DSM 12272", "accession": "GCA_900104115.1", "taxid": 94869, "species_taxid": 94869, "relation_to_type": "type", "validated": true, "ani": 77.6554, "matched_fragments": 376, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium cibarium", "strain": "strain=Sa3CVN1", "accession": "GCA_014836335.1", "taxid": 2762247, "species_taxid": 2762247, "relation_to_type": "type", "validated": true, "ani": 77.3216, "matched_fragments": 242, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium weizhouense", "strain": "strain=YB-6", "accession": "GCA_019431045.1", "taxid": 2859781, "species_taxid": 2859781, 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