{ "type": "genome", "identifier": "GCF_900086655.1", "organism": "Paenibacillus tuaregi", "title": "Paenibacillus tuaregi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900086655.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3980476", "wgs_master": "FLKE00000000.1", "refseq_category": "reference genome", "taxid": "1816681", "species_taxid": "1816681", "organism_name": "Paenibacillus tuaregi", "infraspecific_name": "strain=Marseille-P2472T", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/06/06", "asm_name": "PRJEB13948", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_900086655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/086/655/GCF_900086655.1_PRJEB13948", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5668632", "genome_size_ungapped": "5663828", "gc_percent": "49.000000", "replicon_count": "0", "scaffold_count": "4", "contig_count": "24", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900086655.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "5150", "protein_coding_gene_count": "4993", "non_coding_gene_count": "111", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-06-06", "dateModified": "2016-06-06", "datePublished": "2016-06-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus tuaregi" ], "sample_taxid": [ "1816681" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.616 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.38, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5668632", "Number of Sequences": "4", "Longest Sequences (bp)": "5631190", "N50 (bp)": "5631190", "Gap Ratio (%)": "0.085135", "GCcontent (%)": "49.1", "Number of CDSs": "5103", "Average Protein Length": "316.9", "Coding Ratio (%)": "85.6", "Number of rRNAs": "17", "Number of tRNAs": "90", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus tuaregi", "strain": "strain=Marseille-P2472", "accession": "GCA_900086655.1", "taxid": 1816681, "species_taxid": 1816681, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1888, "total_fragments": 1888, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paenibacillus zeisoli", "strain": "strain=3-5-3", "accession": "GCA_003994465.1", "taxid": 2496267, "species_taxid": 2496267, "relation_to_type": "type", "validated": true, "ani": 80.1698, "matched_fragments": 701, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus faecalis", "strain": "strain=Marseille-P3787", "accession": "GCA_900289175.1", "taxid": 2079532, "species_taxid": 2079532, "relation_to_type": "type", "validated": true, "ani": 78.467, "matched_fragments": 139, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus tianjinensis", "strain": "strain=TB2019", "accession": "GCA_017086365.1", "taxid": 2810347, "species_taxid": 2810347, "relation_to_type": "type", "validated": true, "ani": 78.3814, "matched_fragments": 166, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus shirakamiensis", "strain": 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77.6014, "matched_fragments": 196, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus xylanivorans", "strain": "strain=A59", "accession": "GCA_001280595.1", "taxid": 1705561, "species_taxid": 1705561, "relation_to_type": "type", "validated": true, "ani": 77.4744, "matched_fragments": 156, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus pinistramenti", "strain": "strain=ASL46", "accession": "GCA_005869875.1", "taxid": 1768003, "species_taxid": 1768003, "relation_to_type": "type", "validated": true, "ani": 77.4344, "matched_fragments": 213, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus timonensis", "strain": "strain=DSM 16943", "accession": "GCA_022427145.1", "taxid": 225915, "species_taxid": 225915, "relation_to_type": "type", "validated": true, "ani": 77.4076, "matched_fragments": 189, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus brevis", "strain": "strain=MSJ-6", "accession": "GCA_018919145.1", "taxid": 2841508, "species_taxid": 2841508, "relation_to_type": "type", "validated": true, "ani": 77.3655, "matched_fragments": 187, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus physcomitrellae", "strain": "strain=CGMCC 1.15044", "accession": "GCA_014640575.1", "taxid": 1619311, "species_taxid": 1619311, "relation_to_type": "type", "validated": true, "ani": 77.3633, "matched_fragments": 197, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus lactis", "strain": "strain=DSM 15596", "accession": "GCA_017873605.1", "taxid": 228574, "species_taxid": 228574, "relation_to_type": "type", "validated": true, "ani": 77.3441, "matched_fragments": 196, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus silvae", "strain": "strain=CGMCC 1.12770", "accession": "GCA_014639235.1", "taxid": 1325358, "species_taxid": 1325358, "relation_to_type": "type", "validated": true, "ani": 77.3331, "matched_fragments": 151, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus glucanolyticus", "strain": "strain=NBRC 15330", "accession": "GCA_004000885.1", "taxid": 59843, "species_taxid": 59843, "relation_to_type": "type", "validated": true, "ani": 77.2315, "matched_fragments": 175, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus dakarensis", "strain": "strain=FF9", "accession": "GCA_001373415.1", "taxid": 1527293, "species_taxid": 1527293, "relation_to_type": "type", "validated": true, "ani": 77.1786, "matched_fragments": 138, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus aceti", "strain": "strain=CGMCC 1.15420", "accession": "GCA_014642755.1", "taxid": 1820010, "species_taxid": 1820010, "relation_to_type": "type", "validated": true, "ani": 77.0915, "matched_fragments": 197, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus silagei", "strain": "strain=DSM 101953", "accession": "GCA_017874735.1", "taxid": 1670801, "species_taxid": 1670801, "relation_to_type": "type", "validated": true, "ani": 76.9913, "matched_fragments": 183, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus piscarius", "strain": "strain=P121", "accession": "GCA_022234545.1", "taxid": 1089681, "species_taxid": 1089681, "relation_to_type": "type", "validated": true, "ani": 76.9518, "matched_fragments": 176, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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