{
    "type": "genome",
    "identifier": "GCF_900086705.1",
    "organism": "Massilibacillus massiliensis",
    "title": "Massilibacillus massiliensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "URMITE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900086705.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA3959780",
        "wgs_master": "FLKF00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1806837",
        "species_taxid": "1806837",
        "organism_name": "Massilibacillus massiliensis",
        "infraspecific_name": "strain=Marseille-P2411T",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/06/06",
        "asm_name": "PRJEB13934",
        "asm_submitter": "URMITE",
        "gbrs_paired_asm": "GCA_900086705.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/086/705/GCF_900086705.1_PRJEB13934",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4000953",
        "genome_size_ungapped": "3998774",
        "gc_percent": "37.500000",
        "replicon_count": "0",
        "scaffold_count": "7",
        "contig_count": "12",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900086705.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "3844",
        "protein_coding_gene_count": "3725",
        "non_coding_gene_count": "110",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-06-06",
    "dateModified": "2016-06-06",
    "datePublished": "2016-06-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Massilibacillus massiliensis"
        ],
        "sample_taxid": [
            "1806837"
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        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.121 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4000953",
        "Number of Sequences": "7",
        "Longest Sequences (bp)": "3994660",
        "N50 (bp)": "3994660",
        "Gap Ratio (%)": "0.054787",
        "GCcontent (%)": "37.7",
        "Number of CDSs": "3799",
        "Average Protein Length": "301.6",
        "Coding Ratio (%)": "85.9",
        "Number of rRNAs": "19",
        "Number of tRNAs": "87",
        "Number of CRISPRs": "5"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Massilibacillus massiliensis",
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                "species_taxid": 1806837,
                "relation_to_type": "type",
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                "total_fragments": 1331,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pelosinus fermentans",
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                "accession": "GCA_000271485.2",
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                "species_taxid": 365349,
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                "total_fragments": 1331,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pelorhabdus rhamnosifermentans",
                "strain": "strain=BoRhaA",
                "accession": "GCA_018835585.1",
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                "ani_threshold": 95,
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        ],
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_900086705.1",
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                "total_fragments": 1331,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Massilibacillaceae;g__Massilibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_902363205.1",
                "gtdb_species": "s__CABIZH01 sp902363205",
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                "total_fragments": 1331,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Massilibacillaceae;g__CABIZH01",
                "ani_circumscription_radius": 95.0,
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                "min_intra_species_ani": "97.54",
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                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000271665.2",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_000271485.2",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Propionisporales;f__Propionisporaceae;g__Pelosinus",
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            },
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                "accession": "GCA_002434245.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__UMGS1260;f__UMGS1260;g__Pelorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Propionisporales;f__Propionisporaceae;g__CTSoil-075",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
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        "genome_size": 4000950.0,
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        "rRNA16S_genes": null,
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        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
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        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Massilibacillus",
        "massiliensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}