{
    "type": "genome",
    "identifier": "GCF_900086715.1",
    "organism": "Gracilibacillus timonensis",
    "title": "Gracilibacillus timonensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "URMITE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900086715.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA3959753",
        "wgs_master": "FLKH00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1816696",
        "species_taxid": "1816696",
        "organism_name": "Gracilibacillus timonensis",
        "infraspecific_name": "strain=Marseille-P2481T",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/05/12",
        "asm_name": "PRJEB13933",
        "asm_submitter": "URMITE",
        "gbrs_paired_asm": "GCA_900086715.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/086/715/GCF_900086715.1_PRJEB13933",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4547476",
        "genome_size_ungapped": "4547476",
        "gc_percent": "40.000000",
        "replicon_count": "0",
        "scaffold_count": "12",
        "contig_count": "12",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900086715.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "4372",
        "protein_coding_gene_count": "4245",
        "non_coding_gene_count": "68",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-05-12",
    "dateModified": "2016-05-12",
    "datePublished": "2016-05-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gracilibacillus timonensis"
        ],
        "sample_taxid": [
            "1816696"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.290 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4547476",
        "Number of Sequences": "12",
        "Longest Sequences (bp)": "2217804",
        "N50 (bp)": "854682",
        "Gap Ratio (%)": "0.000044",
        "GCcontent (%)": "39.8",
        "Number of CDSs": "4361",
        "Average Protein Length": "292.2",
        "Coding Ratio (%)": "84.1",
        "Number of rRNAs": "12",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Gracilibacillus timonensis",
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                "species_taxid": 1816696,
                "relation_to_type": "type",
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                "matched_fragments": 1510,
                "total_fragments": 1510,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Gracilibacillus massiliensis",
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                "species_taxid": 1564956,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gracilibacillus suaedae",
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                "accession": "GCA_017599345.1",
                "taxid": 2820273,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "organism_name": "Oceanobacillus profundus",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanobacillus profundus",
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                "status": "below_threshold"
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            {
                "organism_name": "Gracilibacillus boraciitolerans",
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                "accession": "GCA_000521485.1",
                "taxid": 307521,
                "species_taxid": 307521,
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                "ani": 77.2686,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gracilibacillus orientalis",
                "strain": "strain=CGMCC 1.4250",
                "accession": "GCA_900114645.1",
                "taxid": 334253,
                "species_taxid": 334253,
                "relation_to_type": "type",
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                "matched_fragments": 182,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquibacillus saliphilus",
                "strain": "strain=KHM2",
                "accession": "GCA_020404745.1",
                "taxid": 1909422,
                "species_taxid": 1909422,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9076,
                "matched_fragments": 59,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudogracilibacillus auburnensis",
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                "accession": "GCA_003201975.1",
                "taxid": 1494959,
                "species_taxid": 1494959,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 56,
                "total_fragments": 1510,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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                "accession": "GCA_900626275.1",
                "gtdb_species": "s__Gracilibacillus phocaeensis",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Gracilibacillus",
                "ani_circumscription_radius": 95.0,
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                "min_intra_species_ani": "99.02",
                "mean_intra_species_af": "0.89",
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                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
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                "accession": "GCF_016909015.1",
                "gtdb_species": "s__Gracilibacillus alcaliphilus",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
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        ]
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    "_bac2feature": {
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    "_genome_taxon": [
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        "timonensis"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}