{ "type": "genome", "identifier": "GCF_900087055.1", "organism": "Plesiomonas shigelloides", "title": "Plesiomonas shigelloides", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900087055.1", "bioproject": "PRJNA224116", "biosample": "SAMEA2665130", "wgs_master": "na", "refseq_category": "na", "taxid": "703", "species_taxid": "703", "organism_name": "Plesiomonas shigelloides", "infraspecific_name": "strain=NCTC10360", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/06/16", "asm_name": "31289_E01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900087055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/087/055/GCF_900087055.1_31289_E01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3405979", "genome_size_ungapped": "3405979", "gc_percent": "52.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-31", "total_gene_count": "3031", "protein_coding_gene_count": "2855", "non_coding_gene_count": "150", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-06-16", "dateModified": "2016-06-16", "datePublished": "2016-06-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Plesiomonas shigelloides" ], "sample_taxid": [ "703" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.961 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3405979", "Number of Sequences": "1", "Longest Sequences (bp)": "3405979", "N50 (bp)": "3405979", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.0", "Number of CDSs": "2913", "Average Protein Length": "322.7", "Coding Ratio (%)": "82.8", "Number of rRNAs": "33", "Number of tRNAs": "113", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Plesiomonas shigelloides", "strain": "strain=NCTC10360", "accession": "GCA_900087055.1", "taxid": 703, "species_taxid": 703, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1135, "total_fragments": 1135, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Obesumbacterium proteus", "strain": "strain=DSM 2777", "accession": "GCA_001586165.1", "taxid": 82983, "species_taxid": 82983, "relation_to_type": "type", "validated": true, "ani": 79.1518, "matched_fragments": 158, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pectobacterium brasiliense", "strain": "strain=IPO:3540 CFBP:6617 ATCC:BAA-417 IBSBF:1692", "accession": "GCA_016950255.1", "taxid": 180957, "species_taxid": 180957, "relation_to_type": "type", "validated": true, "ani": 78.9512, "matched_fragments": 179, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia marcescens", "strain": "strain=ATCC 13880 substr. 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