{ "type": "genome", "identifier": "GCF_900089595.1", "organism": "Micromonospora auratinigra", "title": "Micromonospora auratinigra", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900089595.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488294", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "261654", "species_taxid": "261654", "organism_name": "Micromonospora auratinigra", "infraspecific_name": "strain=DSM 44815", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/06/16", "asm_name": "IMG-taxon 2617270871 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900089595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/089/595/GCF_900089595.1_IMG-taxon_2617270871_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6758600", "genome_size_ungapped": "6758500", "gc_percent": "73.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900089595.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "6221", "protein_coding_gene_count": "6060", "non_coding_gene_count": "81", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-06-16", "dateModified": "2016-06-16", "datePublished": "2016-06-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora auratinigra" ], "sample_taxid": [ "261654" ], 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humi", "strain": "strain=DSM 45647", "accession": "GCA_900090105.1", "taxid": 745366, "species_taxid": 745366, "relation_to_type": "type", "validated": true, "ani": 87.4447, "matched_fragments": 1610, "total_fragments": 2252, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora eburnea", "strain": "strain=DSM 44814", "accession": "GCA_900090225.1", "taxid": 227316, "species_taxid": 227316, "relation_to_type": "type", "validated": true, "ani": 87.3953, "matched_fragments": 1488, "total_fragments": 2252, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora aurantiaca", "strain": "strain=ATCC 27029", "accession": "GCA_003721415.1", "taxid": 47850, "species_taxid": 47850, "relation_to_type": "type", "validated": true, "ani": 87.08, "matched_fragments": 1547, "total_fragments": 2252, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 85.4889, "matched_fragments": 1483, "total_fragments": 2252, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 85.1998, "matched_fragments": 1269, "total_fragments": 2252, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis acidiphila", "strain": "strain=KCTC 39523", "accession": "GCA_021391495.1", "taxid": 715473, "species_taxid": 715473, "relation_to_type": "type", "validated": true, "ani": 76.3705, "matched_fragments": 620, "total_fragments": 2252, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 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