{ "type": "genome", "identifier": "GCF_900089605.1", "organism": "Micromonospora narathiwatensis", "title": "Micromonospora narathiwatensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900089605.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488479", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "299146", "species_taxid": "299146", "organism_name": "Micromonospora narathiwatensis", "infraspecific_name": "strain=DSM 45248", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/06/16", "asm_name": "IMG-taxon 2617270834 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900089605.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/089/605/GCF_900089605.1_IMG-taxon_2617270834_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6612057", "genome_size_ungapped": "6611957", "gc_percent": "72.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900089605.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "5914", "protein_coding_gene_count": "5766", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-06-16", "dateModified": "2016-06-16", "datePublished": "2016-06-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora narathiwatensis" ], "sample_taxid": [ "299146" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.746 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6611957", "Number of Sequences": "1", "Longest Sequences (bp)": "6611957", "N50 (bp)": "6611957", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.6", "Number of CDSs": "5907", "Average Protein Length": "336.1", "Coding Ratio (%)": "90.1", "Number of rRNAs": "9", "Number of tRNAs": "76", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora narathiwatensis", "strain": "strain=DSM 45248", "accession": "GCA_900089605.1", "taxid": 299146, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora sediminicola", "strain": "strain=DSM 45794", "accession": "GCA_900089585.1", "taxid": 946078, "species_taxid": 946078, "relation_to_type": "type", "validated": true, "ani": 86.8558, "matched_fragments": 1509, "total_fragments": 2204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 86.8329, "matched_fragments": 1482, "total_fragments": 2204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 85.5493, "matched_fragments": 1080, "total_fragments": 2204, "ani_threshold": 95, "status": 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