{ "type": "genome", "identifier": "GCF_900089765.1", "organism": "Vibrio toranzoniae", "title": "Vibrio toranzoniae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UVEG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900089765.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4016015", "wgs_master": "FLOD00000000.1", "refseq_category": "na", "taxid": "1194427", "species_taxid": "1194427", "organism_name": "Vibrio toranzoniae", "infraspecific_name": "strain=CECT 7225", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/06/28", "asm_name": "VtoranzoniaeCECT7225_SPAdes_Prokka", "asm_submitter": "UVEG", "gbrs_paired_asm": "GCA_900089765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/089/765/GCF_900089765.1_VtoranzoniaeCECT7225_SPAdes_Prokka", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4563366", "genome_size_ungapped": "4563366", "gc_percent": "44.000000", "replicon_count": "0", "scaffold_count": "54", "contig_count": "54", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900089765.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "4144", "protein_coding_gene_count": "3902", "non_coding_gene_count": "192", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-06-28", "dateModified": "2016-06-28", "datePublished": "2016-06-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio toranzoniae" ], "sample_taxid": [ "1194427" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "1.294 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4563366", "Number of Sequences": "54", "Longest Sequences (bp)": "948819", "N50 (bp)": "418274", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.9", "Number of CDSs": "3934", "Average Protein Length": "324.0", "Coding Ratio (%)": "83.8", "Number of rRNAs": "11", "Number of tRNAs": "136", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio toranzoniae", "strain": "strain=CECT 7225", "accession": "GCA_900089765.1", "taxid": 1194427, "species_taxid": 1194427, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1497, "total_fragments": 1497, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Vibrio toranzoniae", "strain": "strain=CECT 7225", "accession": "GCA_024347655.1", "taxid": 1194427, "species_taxid": 1194427, "relation_to_type": "type", "validated": true, "ani": 99.9974, "matched_fragments": 1495, "total_fragments": 1497, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Vibrio toranzoniae", "strain": "strain=Vb 10.8", "accession": "GCA_001541335.1", "taxid": 1194427, "species_taxid": 1194427, "relation_to_type": "type", "validated": true, "ani": 99.9765, "matched_fragments": 1461, "total_fragments": 1497, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Vibrio kanaloae", "strain": "strain=LMG 20539", "accession": "GCA_024347535.1", "taxid": 170673, "species_taxid": 170673, "relation_to_type": "type", "validated": true, "ani": 95.4348, "matched_fragments": 1340, "total_fragments": 1497, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Vibrio kanaloae", 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1516159, "species_taxid": 1516159, "relation_to_type": "type", "validated": true, "ani": 88.2614, "matched_fragments": 1231, "total_fragments": 1497, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio gigantis", "strain": "strain=LGP 13", "accession": "GCA_002156475.1", "taxid": 296199, "species_taxid": 296199, "relation_to_type": "type", "validated": true, "ani": 88.1162, "matched_fragments": 1195, "total_fragments": 1497, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio gigantis", "strain": "strain=LMG 22741", "accession": "GCA_024347515.1", "taxid": 296199, "species_taxid": 296199, "relation_to_type": "type", "validated": true, "ani": 88.0171, "matched_fragments": 1225, "total_fragments": 1497, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio bathopelagicus", "strain": "strain=Sal10", "accession": "GCA_014879975.1", "taxid": 2777577, "species_taxid": 2777577, "relation_to_type": "type", 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