{ "type": "genome", "identifier": "GCF_900090105.1", "organism": "Micromonospora humi", "title": "Micromonospora humi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900090105.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488015", "wgs_master": "FMDM00000000.1", "refseq_category": "reference genome", "taxid": "745366", "species_taxid": "745366", "organism_name": "Micromonospora humi", "infraspecific_name": "strain=DSM 45647", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/08/17", "asm_name": "IMG-taxon 2622736513 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900090105.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/090/105/GCF_900090105.1_IMG-taxon_2622736513_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6662588", "genome_size_ungapped": "6662187", "gc_percent": "73.500000", "replicon_count": "0", "scaffold_count": "37", "contig_count": "37", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900090105.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "6200", "protein_coding_gene_count": "6028", "non_coding_gene_count": "101", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-08-17", "dateModified": "2016-08-17", "datePublished": "2016-08-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora humi" ], "sample_taxid": [ "745366" ], 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2203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora chaiyaphumensis", "strain": "strain=DSM 45246", "accession": "GCA_900091435.1", "taxid": 307119, "species_taxid": 307119, "relation_to_type": "type", "validated": true, "ani": 88.2056, "matched_fragments": 1588, "total_fragments": 2203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora terminaliae", "strain": "strain=TMS7", "accession": "GCA_010671825.1", "taxid": 1914461, "species_taxid": 1914461, "relation_to_type": "type", "validated": true, "ani": 87.9504, "matched_fragments": 1576, "total_fragments": 2203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora kangleipakensis", "strain": "strain=DSM 45612", "accession": "GCA_004217615.1", "taxid": 1077942, "species_taxid": 1077942, "relation_to_type": "type", "validated": true, "ani": 86.6019, "matched_fragments": 1473, "total_fragments": 2203, "ani_threshold": 95, 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"organism_name": "Micromonospora phaseoli", "strain": "strain=NBRC 110907", "accession": "GCA_016863675.1", "taxid": 1144548, "species_taxid": 1144548, "relation_to_type": "type", "validated": true, "ani": 83.3487, "matched_fragments": 1326, "total_fragments": 2203, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900090105.1", "gtdb_species": "s__Micromonospora humi", "ani": 100.0, "matched_fragments": 2201, "total_fragments": 2203, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_013694245.1", "gtdb_species": "s__Micromonospora sp013694245", 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