{ "type": "genome", "identifier": "GCF_900090235.1", "organism": "Micromonospora echinaurantiaca", "title": "Micromonospora echinaurantiaca", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900090235.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488338", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "47857", "species_taxid": "47857", "organism_name": "Micromonospora echinaurantiaca", "infraspecific_name": "strain=DSM 43904", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/08/16", "asm_name": "IMG-taxon 2623620557 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900090235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/090/235/GCF_900090235.1_IMG-taxon_2623620557_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7203233", "genome_size_ungapped": "7203133", "gc_percent": "73.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900090235.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "6685", "protein_coding_gene_count": "6482", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-08-16", "dateModified": "2016-08-16", "datePublished": "2016-08-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora echinaurantiaca" ], "sample_taxid": [ "47857" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.892 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 7.01, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7203133", "Number of Sequences": "1", "Longest Sequences (bp)": "7203133", "N50 (bp)": "7203133", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.2", "Number of CDSs": "6710", "Average Protein Length": "317.3", "Coding Ratio (%)": "88.7", "Number of rRNAs": "9", "Number of tRNAs": "76", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora echinaurantiaca", "strain": "strain=DSM 43904", "accession": "GCA_900090235.1", "taxid": 47857, "species_taxid": 47857, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2399, "total_fragments": 2401, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Micromonospora deserti", "strain": "strain=13K206", "accession": "GCA_003236335.1", "taxid": 2070366, "species_taxid": 2070366, "relation_to_type": "type", "validated": true, "ani": 87.9798, "matched_fragments": 1318, "total_fragments": 2401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 87.7837, "matched_fragments": 1254, "total_fragments": 2401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora citrea", "strain": "strain=DSM 43903", "accession": "GCA_900090315.1", "taxid": 47855, "species_taxid": 47855, "relation_to_type": "type", 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"matched_fragments": 1582, "total_fragments": 2401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora inositola", "strain": "strain=DSM 43819", "accession": "GCA_900090285.1", "taxid": 47865, "species_taxid": 47865, "relation_to_type": "type", "validated": true, "ani": 86.4166, "matched_fragments": 1521, "total_fragments": 2401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora kangleipakensis", "strain": "strain=DSM 45612", "accession": "GCA_004217615.1", "taxid": 1077942, "species_taxid": 1077942, "relation_to_type": "type", "validated": true, "ani": 86.4143, "matched_fragments": 1564, "total_fragments": 2401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 86.2859, "matched_fragments": 1414, "total_fragments": 2401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora coxensis", "strain": "strain=DSM 45161", "accession": "GCA_900090295.1", "taxid": 356852, "species_taxid": 356852, "relation_to_type": "type", "validated": true, "ani": 86.2379, "matched_fragments": 1579, "total_fragments": 2401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rhizosphaerae", "strain": "strain=DSM 45431", "accession": "GCA_900091465.1", "taxid": 568872, "species_taxid": 568872, "relation_to_type": "type", "validated": true, "ani": 86.1431, "matched_fragments": 1482, "total_fragments": 2401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora krabiensis", "strain": "strain=DSM 45344", "accession": "GCA_900091425.1", "taxid": 307121, "species_taxid": 307121, "relation_to_type": "type", "validated": true, "ani": 86.0722, "matched_fragments": 1626, "total_fragments": 2401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora costi", "strain": "strain=CS1-12", "accession": "GCA_003626655.1", "taxid": 1530042, "species_taxid": 1530042, "relation_to_type": "type", "validated": true, "ani": 86.0221, "matched_fragments": 1669, "total_fragments": 2401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora auratinigra", "strain": "strain=DSM 44815", "accession": "GCA_900089595.1", "taxid": 261654, "species_taxid": 261654, "relation_to_type": "type", "validated": true, "ani": 85.6433, "matched_fragments": 1528, "total_fragments": 2401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora viridifaciens", "strain": "strain=DSM 43909", "accession": "GCA_900091545.1", "taxid": 1881, "species_taxid": 1881, "relation_to_type": "type", "validated": true, "ani": 85.5063, "matched_fragments": 1499, "total_fragments": 2401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 85.4269, "matched_fragments": 1481, "total_fragments": 2401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora eburnea", "strain": "strain=DSM 44814", "accession": "GCA_900090225.1", "taxid": 227316, "species_taxid": 227316, "relation_to_type": "type", "validated": true, "ani": 85.3129, "matched_fragments": 1455, "total_fragments": 2401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 84.7825, "matched_fragments": 1430, "total_fragments": 2401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phaseoli", 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