{ "type": "genome", "identifier": "GCF_900090245.1", "organism": "Micromonospora halophytica", "title": "Micromonospora halophytica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900090245.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488080", "wgs_master": "FMDN00000000.1", "refseq_category": "reference genome", "taxid": "47864", "species_taxid": "47864", "organism_name": "Micromonospora halophytica", "infraspecific_name": "strain=DSM 43171", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/08/17", "asm_name": "IMG-taxon 2622736531 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900090245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/090/245/GCF_900090245.1_IMG-taxon_2622736531_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6275885", "genome_size_ungapped": "6274821", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "64", "contig_count": "64", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900090245.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "5655", "protein_coding_gene_count": "5467", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-08-17", "dateModified": "2016-08-17", "datePublished": "2016-08-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora halophytica" ], "sample_taxid": [ "47864" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.656 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6275885", "Number of Sequences": "64", "Longest Sequences (bp)": "567466", "N50 (bp)": "220155", "Gap Ratio (%)": "0.016954", "GCcontent (%)": "73.0", "Number of CDSs": "5585", "Average Protein Length": "329.3", "Coding Ratio (%)": "87.9", "Number of rRNAs": "5", "Number of tRNAs": "65", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora halophytica", "strain": "strain=DSM 43171", "accession": "GCA_900090245.1", "taxid": 47864, 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"type", "validated": true, "ani": 88.6426, "matched_fragments": 1496, "total_fragments": 2059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora kangleipakensis", "strain": "strain=DSM 45612", "accession": "GCA_004217615.1", "taxid": 1077942, "species_taxid": 1077942, "relation_to_type": "type", "validated": true, "ani": 86.915, "matched_fragments": 1384, "total_fragments": 2059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 86.5734, "matched_fragments": 1084, "total_fragments": 2059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 86.5452, "matched_fragments": 1408, "total_fragments": 2059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rifamycinica", "strain": "strain=AM105", "accession": "GCA_001542325.1", "taxid": 291594, "species_taxid": 291594, "relation_to_type": "type", "validated": true, "ani": 86.5158, "matched_fragments": 1281, "total_fragments": 2059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rifamycinica", "strain": "strain=DSM 44983", "accession": "GCA_900090265.1", "taxid": 291594, "species_taxid": 291594, "relation_to_type": "type", "validated": true, "ani": 86.4849, "matched_fragments": 1392, "total_fragments": 2059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rhizosphaerae", "strain": "strain=DSM 45431", "accession": "GCA_900091465.1", "taxid": 568872, "species_taxid": 568872, "relation_to_type": "type", "validated": true, "ani": 86.4564, "matched_fragments": 1272, "total_fragments": 2059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora matsumotoense", "strain": "strain=DSM 44100", "accession": "GCA_900091525.1", "taxid": 121616, "species_taxid": 121616, "relation_to_type": "type", "validated": true, "ani": 86.3638, "matched_fragments": 1449, "total_fragments": 2059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora echinaurantiaca", "strain": "strain=DSM 43904", "accession": "GCA_900090235.1", "taxid": 47857, "species_taxid": 47857, "relation_to_type": "type", "validated": true, "ani": 86.1334, "matched_fragments": 1448, "total_fragments": 2059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora carbonacea", "strain": "strain=DSM 43168", "accession": "GCA_900091535.1", "taxid": 47853, "species_taxid": 47853, "relation_to_type": "type", "validated": true, "ani": 86.0052, "matched_fragments": 1450, "total_fragments": 2059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora echinofusca", "strain": "strain=DSM 43913", "accession": "GCA_900091445.1", "taxid": 47858, "species_taxid": 47858, "relation_to_type": "type", "validated": true, "ani": 85.9747, "matched_fragments": 1486, "total_fragments": 2059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora carbonacea", "strain": "strain=aurantiaca", "accession": "GCA_013389765.1", "taxid": 47853, "species_taxid": 47853, "relation_to_type": "type", "validated": true, "ani": 85.9732, "matched_fragments": 1441, "total_fragments": 2059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora narathiwatensis", "strain": "strain=DSM 45248", "accession": "GCA_900089605.1", "taxid": 299146, "species_taxid": 299146, "relation_to_type": "type", "validated": true, "ani": 85.9054, "matched_fragments": 1358, "total_fragments": 2059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora carbonacea", "strain": "strain=DSM 43815", "accession": "GCA_014205165.1", "taxid": 47853, "species_taxid": 47853, "relation_to_type": "type", "validated": true, "ani": 85.8868, "matched_fragments": 1457, "total_fragments": 2059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 85.5873, "matched_fragments": 1427, "total_fragments": 2059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 85.3461, "matched_fragments": 1229, "total_fragments": 2059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }