{ "type": "genome", "identifier": "GCF_900090285.1", "organism": "Micromonospora inositola", "title": "Micromonospora inositola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900090285.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488340", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "47865", "species_taxid": "47865", "organism_name": "Micromonospora inositola", "infraspecific_name": "strain=DSM 43819", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/08/16", "asm_name": "IMG-taxon 2623620396 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900090285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/090/285/GCF_900090285.1_IMG-taxon_2623620396_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6708094", "genome_size_ungapped": "6707994", "gc_percent": "72.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900090285.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "6456", "protein_coding_gene_count": "6245", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-08-16", "dateModified": "2016-08-16", "datePublished": "2016-08-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora inositola" ], "sample_taxid": [ "47865" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.780 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6707994", "Number of Sequences": "1", "Longest Sequences (bp)": "6707994", "N50 (bp)": "6707994", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.2", "Number of CDSs": "6475", "Average Protein Length": "304.2", "Coding Ratio (%)": "88.1", "Number of rRNAs": "9", "Number of tRNAs": "72", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora inositola", "strain": "strain=DSM 43819", "accession": "GCA_900090285.1", "taxid": 47865, 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"matched_fragments": 1555, "total_fragments": 2236, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora purpureochromogenes", "strain": "strain=DSM 43821", "accession": "GCA_900091515.1", "taxid": 47872, "species_taxid": 47872, "relation_to_type": "type", "validated": true, "ani": 87.599, "matched_fragments": 1545, "total_fragments": 2236, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora coxensis", "strain": "strain=DSM 45161", "accession": "GCA_900090295.1", "taxid": 356852, "species_taxid": 356852, "relation_to_type": "type", "validated": true, "ani": 87.0698, "matched_fragments": 1408, "total_fragments": 2236, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora siamensis", "strain": "strain=DSM 45097", "accession": "GCA_900090305.1", "taxid": 299152, "species_taxid": 299152, "relation_to_type": "type", "validated": true, "ani": 86.7135, "matched_fragments": 1446, 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