{ "type": "genome", "identifier": "GCF_900091445.1", "organism": "Micromonospora echinofusca", "title": "Micromonospora echinofusca", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900091445.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488339", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "47858", "species_taxid": "47858", "organism_name": "Micromonospora echinofusca", "infraspecific_name": "strain=DSM 43913", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/08/15", "asm_name": "IMG-taxon 2623620567 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900091445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/091/445/GCF_900091445.1_IMG-taxon_2623620567_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7002627", "genome_size_ungapped": "7002527", "gc_percent": "73.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900091445.1-RS_2024_10_17", "annotation_date": "2024-10-17", "total_gene_count": "6129", "protein_coding_gene_count": "5948", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-08-15", "dateModified": "2016-08-15", "datePublished": "2016-08-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora echinofusca" ], "sample_taxid": [ "47858" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.835 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7002527", "Number of Sequences": "1", "Longest Sequences (bp)": "7002527", "N50 (bp)": "7002527", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.3", "Number of CDSs": "6189", "Average Protein Length": "338.7", "Coding Ratio (%)": "89.8", "Number of rRNAs": "12", "Number of tRNAs": "72", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora echinofusca", "strain": "strain=DSM 43913", "accession": "GCA_900091445.1", "taxid": 47858, 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"matched_fragments": 1485, "total_fragments": 2334, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora purpureochromogenes", "strain": "strain=DSM 43821", "accession": "GCA_900091515.1", "taxid": 47872, "species_taxid": 47872, "relation_to_type": "type", "validated": true, "ani": 85.9523, "matched_fragments": 1514, "total_fragments": 2334, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 85.6803, "matched_fragments": 1288, "total_fragments": 2334, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora veneta", "strain": "strain=CAP181", "accession": "GCA_016598485.1", "taxid": 2796464, "species_taxid": 2796464, "relation_to_type": "type", "validated": true, "ani": 85.571, "matched_fragments": 1382, "total_fragments": 2334, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora carbonacea", "strain": "strain=DSM 43815", "accession": "GCA_014205165.1", "taxid": 47853, "species_taxid": 47853, "relation_to_type": "type", "validated": true, "ani": 85.5381, "matched_fragments": 1488, "total_fragments": 2334, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora carbonacea", "strain": "strain=aurantiaca", "accession": "GCA_013389765.1", "taxid": 47853, "species_taxid": 47853, "relation_to_type": "type", "validated": true, "ani": 85.5066, "matched_fragments": 1498, "total_fragments": 2334, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora carbonacea", "strain": "strain=DSM 43168", "accession": "GCA_900091535.1", "taxid": 47853, "species_taxid": 47853, "relation_to_type": "type", "validated": true, "ani": 85.3214, "matched_fragments": 1508, "total_fragments": 2334, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 84.8576, "matched_fragments": 1477, "total_fragments": 2334, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rifamycinica", "strain": "strain=DSM 44983", "accession": "GCA_900090265.1", "taxid": 291594, "species_taxid": 291594, "relation_to_type": "type", "validated": true, "ani": 84.6614, "matched_fragments": 1385, "total_fragments": 2334, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rifamycinica", "strain": "strain=AM105", "accession": "GCA_001542325.1", "taxid": 291594, "species_taxid": 291594, "relation_to_type": "type", "validated": true, "ani": 84.6501, "matched_fragments": 1299, "total_fragments": 2334, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 84.6391, "matched_fragments": 1448, "total_fragments": 2334, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora radicis", "strain": "strain=AZ1-13", "accession": "GCA_003583405.1", "taxid": 1894971, "species_taxid": 1894971, "relation_to_type": "type", "validated": true, "ani": 84.4, "matched_fragments": 1276, "total_fragments": 2334, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phaseoli", "strain": "strain=CGMCC 4.7038", "accession": "GCA_900109115.1", "taxid": 1144548, "species_taxid": 1144548, "relation_to_type": "type", "validated": true, "ani": 84.3488, "matched_fragments": 1339, "total_fragments": 2334, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phaseoli", 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