{ "type": "genome", "identifier": "GCF_900091455.1", "organism": "Micromonospora coriariae", "title": "Micromonospora coriariae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900091455.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488267", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "285665", "species_taxid": "285665", "organism_name": "Micromonospora coriariae", "infraspecific_name": "strain=DSM 44875", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/08/15", "asm_name": "IMG-taxon 2623620612 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900091455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/091/455/GCF_900091455.1_IMG-taxon_2623620612_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6929787", "genome_size_ungapped": "6929687", "gc_percent": "72.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900091455.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "6516", "protein_coding_gene_count": "6319", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-08-15", "dateModified": "2016-08-15", "datePublished": "2016-08-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora coriariae" ], "sample_taxid": [ "285665" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.847 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6929687", "Number of Sequences": "1", "Longest Sequences (bp)": "6929687", "N50 (bp)": "6929687", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.8", "Number of CDSs": "6529", "Average Protein Length": "317.4", "Coding Ratio (%)": "89.7", "Number of rRNAs": "9", "Number of tRNAs": "66", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora coriariae", "strain": "strain=DSM 44875", "accession": "GCA_900091455.1", "taxid": 285665, 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"ani": 89.1192, "matched_fragments": 1720, "total_fragments": 2309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora jinlongensis", "strain": "strain=DSM 45876", "accession": "GCA_013410645.1", "taxid": 1287877, "species_taxid": 1287877, "relation_to_type": "type", "validated": true, "ani": 89.0855, "matched_fragments": 1699, "total_fragments": 2309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora saelicesensis", "strain": "strain=DSM 44871", "accession": "GCA_900091575.1", "taxid": 285676, "species_taxid": 285676, "relation_to_type": "type", "validated": true, "ani": 89.0016, "matched_fragments": 1732, "total_fragments": 2309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora noduli", "strain": "strain=GUI43", "accession": "GCA_003264365.1", "taxid": 709876, "species_taxid": 709876, "relation_to_type": "type", "validated": true, "ani": 88.9466, "matched_fragments": 1681, "total_fragments": 2309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora arida", "strain": "strain=LB32", "accession": "GCA_003857035.1", "taxid": 2203715, "species_taxid": 2203715, "relation_to_type": "type", "validated": true, "ani": 88.7564, "matched_fragments": 1570, "total_fragments": 2309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ureilytica", "strain": "strain=DSM 101692", "accession": "GCA_015751765.1", "taxid": 709868, "species_taxid": 709868, "relation_to_type": "type", "validated": true, "ani": 88.731, "matched_fragments": 1660, "total_fragments": 2309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora taraxaci", "strain": "strain=DSM 45885", "accession": "GCA_007830095.1", "taxid": 1316803, "species_taxid": 1316803, "relation_to_type": "type", "validated": true, "ani": 88.4477, "matched_fragments": 1700, "total_fragments": 2309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 86.3589, "matched_fragments": 1196, "total_fragments": 2309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 84.6578, "matched_fragments": 1436, "total_fragments": 2309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora haikouensis", "strain": "strain=DSM 45626", "accession": "GCA_900091595.1", "taxid": 686309, "species_taxid": 686309, "relation_to_type": "type", "validated": true, "ani": 84.6076, "matched_fragments": 1388, "total_fragments": 2309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 84.2619, "matched_fragments": 1386, "total_fragments": 2309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phaseoli", "strain": "strain=NBRC 110907", "accession": "GCA_016863675.1", "taxid": 1144548, "species_taxid": 1144548, "relation_to_type": "type", "validated": true, "ani": 83.606, "matched_fragments": 1328, "total_fragments": 2309, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900091455.1", "gtdb_species": "s__Micromonospora coriariae", "ani": 100.0, "matched_fragments": 2309, "total_fragments": 2309, "gtdb_taxonomy": 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