{ "type": "genome", "identifier": "GCF_900091495.1", "organism": "Micromonospora echinospora", "title": "Micromonospora echinospora", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900091495.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488361", "wgs_master": "na", "refseq_category": "na", "taxid": "1877", "species_taxid": "1877", "organism_name": "Micromonospora echinospora", "infraspecific_name": "strain=DSM 43816", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/08/15", "asm_name": "IMG-taxon 2622736613 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900091495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/091/495/GCF_900091495.1_IMG-taxon_2622736613_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7775586", "genome_size_ungapped": "7775486", "gc_percent": "72.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-08", "total_gene_count": "6679", "protein_coding_gene_count": "6445", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-08-15", "dateModified": "2016-08-15", "datePublished": "2016-08-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora echinospora" ], "sample_taxid": [ "1877" ], 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"matched_fragments": 1472, "total_fragments": 2591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 84.4033, "matched_fragments": 1066, "total_fragments": 2591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora inositola", "strain": "strain=DSM 43819", "accession": "GCA_900090285.1", "taxid": 47865, "species_taxid": 47865, "relation_to_type": "type", "validated": true, "ani": 84.3448, "matched_fragments": 1293, "total_fragments": 2591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora carbonacea", "strain": "strain=aurantiaca", "accession": "GCA_013389765.1", "taxid": 47853, "species_taxid": 47853, "relation_to_type": "type", "validated": true, "ani": 84.178, "matched_fragments": 1571, "total_fragments": 2591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora kangleipakensis", "strain": "strain=DSM 45612", "accession": "GCA_004217615.1", "taxid": 1077942, "species_taxid": 1077942, "relation_to_type": "type", "validated": true, "ani": 84.1659, "matched_fragments": 1347, "total_fragments": 2591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora citrea", "strain": "strain=DSM 43903", "accession": "GCA_900090315.1", "taxid": 47855, "species_taxid": 47855, "relation_to_type": "type", "validated": true, "ani": 84.1429, "matched_fragments": 1478, "total_fragments": 2591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora veneta", "strain": "strain=CAP181", "accession": "GCA_016598485.1", "taxid": 2796464, "species_taxid": 2796464, "relation_to_type": "type", "validated": true, "ani": 83.9882, "matched_fragments": 1307, "total_fragments": 2591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 83.6803, "matched_fragments": 1223, "total_fragments": 2591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 83.6667, "matched_fragments": 1408, "total_fragments": 2591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 83.6108, "matched_fragments": 1416, "total_fragments": 2591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora costi", "strain": "strain=CS1-12", "accession": "GCA_003626655.1", "taxid": 1530042, "species_taxid": 1530042, "relation_to_type": "type", "validated": true, "ani": 83.1203, "matched_fragments": 1330, "total_fragments": 2591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phaseoli", "strain": "strain=NBRC 110907", "accession": "GCA_016863675.1", "taxid": 1144548, "species_taxid": 1144548, "relation_to_type": "type", "validated": true, "ani": 82.8433, "matched_fragments": 1281, "total_fragments": 2591, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900091495.1", "gtdb_species": "s__Micromonospora echinospora", "ani": 100.0, "matched_fragments": 2590, "total_fragments": 2591, "gtdb_taxonomy": 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