{ "type": "genome", "identifier": "GCF_900091565.1", "organism": "Micromonospora marina", "title": "Micromonospora marina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900091565.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488016", "wgs_master": "FMCV00000000.1", "refseq_category": "reference genome", "taxid": "307120", "species_taxid": "307120", "organism_name": "Micromonospora marina", "infraspecific_name": "strain=DSM 45555", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/08/16", "asm_name": "IMG-taxon 2622736534 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900091565.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/091/565/GCF_900091565.1_IMG-taxon_2622736534_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6060597", "genome_size_ungapped": "6059272", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "74", "contig_count": "74", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900091565.1-RS_2024_04_21", "annotation_date": "2024-04-21", "total_gene_count": "5588", "protein_coding_gene_count": "5364", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-08-16", "dateModified": "2016-08-16", "datePublished": "2016-08-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora marina" ], "sample_taxid": [ "307120" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.602 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6060597", "Number of Sequences": "74", "Longest Sequences (bp)": "523747", "N50 (bp)": "179844", "Gap Ratio (%)": "0.021863", "GCcontent (%)": "72.8", "Number of CDSs": "5506", "Average Protein Length": "325.5", "Coding Ratio (%)": "88.7", "Number of rRNAs": "5", "Number of tRNAs": "68", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora marina", "strain": "strain=DSM 45555", "accession": "GCA_900091565.1", "taxid": 307120, "species_taxid": 307120, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1977, "total_fragments": 1982, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Micromonospora aurantiaca", "strain": "strain=ATCC 27029", "accession": "GCA_000145235.1", "taxid": 47850, "species_taxid": 47850, "relation_to_type": "type", "validated": true, "ani": 94.424, "matched_fragments": 1688, "total_fragments": 1982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora aurantiaca", "strain": "strain=ATCC 27029", "accession": "GCA_003721415.1", "taxid": 47850, "species_taxid": 47850, "relation_to_type": "type", "validated": true, "ani": 94.289, "matched_fragments": 1679, "total_fragments": 1982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora tulbaghiae", "strain": "strain=DSM 45142", "accession": "GCA_900091605.1", "taxid": 479978, "species_taxid": 479978, "relation_to_type": "type", "validated": true, "ani": 94.0114, "matched_fragments": 1576, "total_fragments": 1982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora chalcea", "strain": "strain=DSM 43026", "accession": "GCA_002926165.1", "taxid": 1874, "species_taxid": 1874, "relation_to_type": "type", "validated": true, "ani": 92.8439, "matched_fragments": 1567, "total_fragments": 1982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora sediminicola", "strain": "strain=DSM 45794", "accession": "GCA_900089585.1", "taxid": 946078, "species_taxid": 946078, "relation_to_type": "type", "validated": true, "ani": 89.4033, "matched_fragments": 1547, "total_fragments": 1982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora maritima", "strain": "", "accession": "GCA_902825405.1", "taxid": 986711, "species_taxid": 986711, "relation_to_type": "type", "validated": true, "ani": 89.2854, "matched_fragments": 1139, "total_fragments": 1982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 89.0205, "matched_fragments": 1531, "total_fragments": 1982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 84.6449, "matched_fragments": 1315, "total_fragments": 1982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 84.2577, "matched_fragments": 1166, "total_fragments": 1982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora nigra", "strain": "strain=DSM 43818", "accession": "GCA_900091585.1", "taxid": 145857, "species_taxid": 145857, "relation_to_type": "type", "validated": true, "ani": 83.94, "matched_fragments": 1278, "total_fragments": 1982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phaseoli", "strain": "strain=NBRC 110907", "accession": "GCA_016863675.1", "taxid": 1144548, "species_taxid": 1144548, "relation_to_type": "type", "validated": true, "ani": 83.3769, "matched_fragments": 1226, "total_fragments": 1982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora fiedleri", "strain": "strain=MG-37", "accession": "GCA_016774385.1", "taxid": 1157498, "species_taxid": 1157498, "relation_to_type": "type", "validated": true, "ani": 83.3181, "matched_fragments": 1239, "total_fragments": 1982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora maris", "strain": "strain=AB-18-032", "accession": "GCA_000204155.1", "taxid": 1003110, "species_taxid": 1003110, "relation_to_type": "type", "validated": true, "ani": 83.2853, "matched_fragments": 1242, "total_fragments": 1982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora maris", "strain": "strain=NRRL B-24793", "accession": "GCA_001507315.1", "taxid": 1003110, "species_taxid": 1003110, "relation_to_type": "type", "validated": true, "ani": 83.2758, "matched_fragments": 1227, "total_fragments": 1982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis acidiphila", "strain": "strain=KCTC 39523", "accession": "GCA_021391495.1", "taxid": 715473, "species_taxid": 715473, "relation_to_type": "type", "validated": true, "ani": 76.4253, "matched_fragments": 569, "total_fragments": 1982, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900091565.1", "gtdb_species": "s__Micromonospora marina", "ani": 100.0, "matched_fragments": 1977, "total_fragments": 1982, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.54", "min_intra_species_ani": "95.96", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_000145235.1", "gtdb_species": "s__Micromonospora aurantiaca", "ani": 94.434, "matched_fragments": 1688, "total_fragments": 1982, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.1942, "mean_intra_species_ani": "98.37", "min_intra_species_ani": "95.58", "mean_intra_species_af": "0.90", 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