{ "type": "genome", "identifier": "GCF_900094575.1", "organism": "Bradyrhizobium yuanmingense", "title": "Bradyrhizobium yuanmingense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900094575.1", "bioproject": "PRJNA224116", "biosample": "SAMN04487810", "wgs_master": "FMAE00000000.1", "refseq_category": "na", "taxid": "108015", "species_taxid": "108015", "organism_name": "Bradyrhizobium yuanmingense", "infraspecific_name": "strain=CCBAU 10071", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/08/05", "asm_name": "IMG-taxon 2617270741 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900094575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/094/575/GCF_900094575.1_IMG-taxon_2617270741_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8201522", "genome_size_ungapped": "8201482", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "108", "contig_count": "108", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900094575.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "7854", "protein_coding_gene_count": "7544", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-08-05", "dateModified": "2016-08-05", "datePublished": "2016-08-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Bradyrhizobium yuanmingense" ], "sample_taxid": [ "108015" ], 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"type", "validated": true, "ani": 90.3913, "matched_fragments": 1983, "total_fragments": 2678, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium diversitatis", "strain": "strain=CNPSo 4019", "accession": "GCA_016031635.1", "taxid": 2755406, "species_taxid": 2755406, "relation_to_type": "type", "validated": true, "ani": 90.0125, "matched_fragments": 1949, "total_fragments": 2678, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium vignae", "strain": "strain=LMG 28791", "accession": "GCA_004114425.1", "taxid": 1549949, "species_taxid": 1549949, "relation_to_type": "type", "validated": true, "ani": 89.6536, "matched_fragments": 1881, "total_fragments": 2678, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium frederickii", "strain": "strain=CNPSo 3426", "accession": "GCA_004570865.1", "taxid": 2560054, "species_taxid": 2560054, "relation_to_type": "type", "validated": true, "ani": 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"total_fragments": 2678, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium symbiodeficiens", "strain": "strain=85S1MB", "accession": "GCA_002266465.2", "taxid": 1404367, "species_taxid": 1404367, "relation_to_type": "type", "validated": true, "ani": 88.6947, "matched_fragments": 1805, "total_fragments": 2678, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium niftali", "strain": "strain=CNPSo 3448", "accession": "GCA_004571025.1", "taxid": 2560055, "species_taxid": 2560055, "relation_to_type": "type", "validated": true, "ani": 88.4715, "matched_fragments": 1977, "total_fragments": 2678, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cajani", "strain": "strain=1010", "accession": "GCA_009759665.1", "taxid": 1928661, "species_taxid": 1928661, "relation_to_type": "type", "validated": true, "ani": 88.4508, "matched_fragments": 1934, "total_fragments": 2678, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium betae", "strain": "strain=CECT 5829", "accession": "GCA_024806875.1", "taxid": 244734, "species_taxid": 244734, "relation_to_type": "type", "validated": true, "ani": 87.9729, "matched_fragments": 1695, "total_fragments": 2678, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium viridifuturi", "strain": "strain=SEMIA 690", "accession": "GCA_001238275.1", "taxid": 1654716, "species_taxid": 1654716, "relation_to_type": "type", "validated": true, "ani": 82.7625, "matched_fragments": 1460, "total_fragments": 2678, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium oropedii", "strain": "strain=Pear76", "accession": "GCA_020889685.1", "taxid": 1571201, "species_taxid": 1571201, "relation_to_type": "type", "validated": true, "ani": 82.6871, "matched_fragments": 1393, "total_fragments": 2678, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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