{
    "type": "genome",
    "identifier": "GCF_900094585.1",
    "organism": "Rhizobium multihospitium",
    "title": "Rhizobium multihospitium",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900094585.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04487814",
        "wgs_master": "FMAG00000000.1",
        "refseq_category": "reference genome",
        "taxid": "410764",
        "species_taxid": "410764",
        "organism_name": "Rhizobium multihospitium",
        "infraspecific_name": "strain=HAMBI 2975",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/08/04",
        "asm_name": "IMG-taxon 2615840698 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900094585.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/094/585/GCF_900094585.1_IMG-taxon_2615840698_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7319877",
        "genome_size_ungapped": "7316837",
        "gc_percent": "60.000000",
        "replicon_count": "0",
        "scaffold_count": "19",
        "contig_count": "19",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900094585.1-RS_2024_04_30",
        "annotation_date": "2024-04-30",
        "total_gene_count": "6893",
        "protein_coding_gene_count": "6773",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-08-04",
    "dateModified": "2016-08-04",
    "datePublished": "2016-08-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rhizobium multihospitium"
        ],
        "sample_taxid": [
            "410764"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "2.049 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7319877",
        "Number of Sequences": "19",
        "Longest Sequences (bp)": "1498006",
        "N50 (bp)": "951609",
        "Gap Ratio (%)": "0.041531",
        "GCcontent (%)": "59.8",
        "Number of CDSs": "6966",
        "Average Protein Length": "306.2",
        "Coding Ratio (%)": "87.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "55",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Rhizobium multihospitium",
                "strain": "strain=HAMBI 2975",
                "accession": "GCA_900094585.1",
                "taxid": 410764,
                "species_taxid": 410764,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2431,
                "total_fragments": 2432,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Rhizobium dioscoreae",
                "strain": "strain=S-93",
                "accession": "GCA_009176305.1",
                "taxid": 2653122,
                "species_taxid": 2653122,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.2489,
                "matched_fragments": 1894,
                "total_fragments": 2432,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium hainanense",
                "strain": "strain=CCBAU 57015",
                "accession": "GCA_900094555.1",
                "taxid": 52131,
                "species_taxid": 52131,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.4093,
                "matched_fragments": 2026,
                "total_fragments": 2432,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium tropici",
                "strain": "strain=CIAT 899",
                "accession": "GCA_000330885.1",
                "taxid": 398,
                "species_taxid": 398,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.1047,
                "matched_fragments": 1684,
                "total_fragments": 2432,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium freirei",
                "strain": "strain=PRF 81",
                "accession": "GCA_000359745.1",
                "taxid": 1353277,
                "species_taxid": 1353277,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.4368,
                "matched_fragments": 1546,
                "total_fragments": 2432,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium miluonense",
                "strain": "strain=HAMBI 2971",
                "accession": "GCA_900094545.1",
                "taxid": 411945,
                "species_taxid": 411945,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.0668,
                "matched_fragments": 1588,
                "total_fragments": 2432,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agrobacterium rhizogenes",
                "strain": "strain=NBRC 13257",
                "accession": "GCA_000696095.1",
                "taxid": 359,
                "species_taxid": 359,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3309,
                "matched_fragments": 1402,
                "total_fragments": 2432,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium croatiense",
                "strain": "strain=13T",
                "accession": "GCA_019793465.1",
                "taxid": 2867516,
                "species_taxid": 2867516,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9529,
                "matched_fragments": 1003,
                "total_fragments": 2432,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium redzepovicii",
                "strain": "strain=18T",
                "accession": "GCA_019793435.1",
                "taxid": 2867518,
                "species_taxid": 2867518,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6633,
                "matched_fragments": 1054,
                "total_fragments": 2432,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium mongolense subsp. loessense",
                "strain": "strain=CGMCC 1.3401",
                "accession": "GCA_900099775.1",
                "taxid": 158890,
                "species_taxid": 57676,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8452,
                "matched_fragments": 913,
                "total_fragments": 2432,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella pollutisoli",
                "strain": "strain=KCTC 52677",
                "accession": "GCA_024609765.1",
                "taxid": 2250594,
                "species_taxid": 2250594,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5874,
                "matched_fragments": 703,
                "total_fragments": 2432,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900094585.1",
                "gtdb_species": "s__Rhizobium multihospitium",
                "ani": 100.0,
                "matched_fragments": 2431,
                "total_fragments": 2432,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.86",
                "min_intra_species_ani": "97.86",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002277895.1",
                "gtdb_species": "s__Rhizobium sp002277895",
                "ani": 91.238,
                "matched_fragments": 1923,
                "total_fragments": 2432,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.72",
                "min_intra_species_ani": "98.72",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900469175.1",
                "gtdb_species": "s__Rhizobium sp900469175",
                "ani": 91.1786,
                "matched_fragments": 1883,
                "total_fragments": 2432,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.45",
                "min_intra_species_ani": "95.56",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 48,
                "status": "-"
            },
            {
                "accession": "GCA_900472485.1",
                "gtdb_species": "s__Rhizobium sp900472485",
                "ani": 91.1508,
                "matched_fragments": 1888,
                "total_fragments": 2432,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.92",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_013322215.1",
                "gtdb_species": "s__Rhizobium rhizogenes_D",
                "ani": 91.1285,
                "matched_fragments": 2041,
                "total_fragments": 2432,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900094555.1",
                "gtdb_species": "s__Rhizobium hainanense",
                "ani": 90.4015,
                "matched_fragments": 2027,
                "total_fragments": 2432,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000330885.1",
                "gtdb_species": "s__Rhizobium tropici",
                "ani": 89.1076,
                "matched_fragments": 1683,
                "total_fragments": 2432,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.18",
                "min_intra_species_ani": "95.15",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_900469475.1",
                "gtdb_species": "s__Rhizobium sp900469475",
                "ani": 88.9907,
                "matched_fragments": 1674,
                "total_fragments": 2432,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.70",
                "min_intra_species_ani": "97.21",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 20,
                "status": "-"
            },
            {
                "accession": "GCF_000799755.1",
                "gtdb_species": "s__Rhizobium tropici_A",
                "ani": 88.0277,
                "matched_fragments": 1857,
                "total_fragments": 2432,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.89",
                "min_intra_species_ani": "99.82",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_900468625.1",
                "gtdb_species": "s__Rhizobium sp900468625",
                "ani": 87.6019,
                "matched_fragments": 1592,
                "total_fragments": 2432,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.33",
                "min_intra_species_ani": "98.37",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_000359745.1",
                "gtdb_species": "s__Rhizobium freirei",
                "ani": 86.4145,
                "matched_fragments": 1550,
                "total_fragments": 2432,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014207095.1",
                "gtdb_species": "s__Rhizobium lusitanum_B",
                "ani": 85.2476,
                "matched_fragments": 1549,
                "total_fragments": 2432,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012641435.1",
                "gtdb_species": "s__Rhizobium sp012641435",
                "ani": 85.105,
                "matched_fragments": 1512,
                "total_fragments": 2432,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": 0.0,
        "doubling_h": 0.225,
        "growth_tmp": 28.0,
        "optimum_tmp": 28.0,
        "optimum_ph": 7.0,
        "genome_size": 7319877.0,
        "gc_content": 60.147,
        "coding_genes": 6587.615,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 51.725,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Rhizobium",
        "multihospitium"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}