{
    "type": "genome",
    "identifier": "GCF_900094595.1",
    "organism": "Cupriavidus alkaliphilus",
    "title": "Cupriavidus alkaliphilus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900094595.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05417690",
        "wgs_master": "FMAD00000000.1",
        "refseq_category": "na",
        "taxid": "942866",
        "species_taxid": "942866",
        "organism_name": "Cupriavidus alkaliphilus",
        "infraspecific_name": "strain=ASC-732",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/08/04",
        "asm_name": "IMG-taxon 2671180232 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900094595.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/094/595/GCF_900094595.1_IMG-taxon_2671180232_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6125055",
        "genome_size_ungapped": "6123920",
        "gc_percent": "68.000000",
        "replicon_count": "0",
        "scaffold_count": "34",
        "contig_count": "34",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900094595.1-RS_2024_04_21",
        "annotation_date": "2024-04-21",
        "total_gene_count": "5603",
        "protein_coding_gene_count": "5485",
        "non_coding_gene_count": "65",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-08-04",
    "dateModified": "2016-08-04",
    "datePublished": "2016-08-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Cupriavidus alkaliphilus"
        ],
        "sample_taxid": [
            "942866"
        ],
        "sample_host_organism": [
            "Not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not collected"
        ],
        "sample_host_location_id": [],
        "data_size": "1.663 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6125055",
        "Number of Sequences": "34",
        "Longest Sequences (bp)": "747599",
        "N50 (bp)": "411922",
        "Gap Ratio (%)": "0.018530",
        "GCcontent (%)": "67.8",
        "Number of CDSs": "5524",
        "Average Protein Length": "326.7",
        "Coding Ratio (%)": "88.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Cupriavidus alkaliphilus",
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                "accession": "GCA_900094595.1",
                "taxid": 942866,
                "species_taxid": 942866,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2022,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Cupriavidus nantongensis",
                "strain": "strain=X1",
                "accession": "GCA_001598055.1",
                "taxid": 1796606,
                "species_taxid": 1796606,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1701,
                "total_fragments": 2024,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cupriavidus neocaledonicus",
                "strain": "strain=STM6070",
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                "species_taxid": 1040979,
                "relation_to_type": "type",
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                "ani": 94.3296,
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                "total_fragments": 2024,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cupriavidus taiwanensis",
                "strain": "strain=LMG 19424",
                "accession": "GCA_000069785.1",
                "taxid": 164546,
                "species_taxid": 164546,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 93.5996,
                "matched_fragments": 1714,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cupriavidus lacunae",
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                "accession": "GCA_003353055.1",
                "taxid": 2666307,
                "species_taxid": 2666307,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.9096,
                "matched_fragments": 1545,
                "total_fragments": 2024,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cupriavidus oxalaticus",
                "strain": "strain=Ox1",
                "accession": "GCA_016894385.1",
                "taxid": 96344,
                "species_taxid": 96344,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.83,
                "matched_fragments": 1503,
                "total_fragments": 2024,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cupriavidus numazuensis",
                "strain": "strain=LMG 26411",
                "accession": "GCA_905397435.1",
                "taxid": 221992,
                "species_taxid": 221992,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.8038,
                "matched_fragments": 1352,
                "total_fragments": 2024,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Burkholderia perseverans",
                "strain": "strain=INN12",
                "accession": "GCA_022870505.1",
                "taxid": 2615214,
                "species_taxid": 2615214,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7814,
                "matched_fragments": 798,
                "total_fragments": 2024,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia agilis",
                "strain": "strain=JCM 31605",
                "accession": "GCA_024756255.1",
                "taxid": 1811226,
                "species_taxid": 1811226,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5876,
                "matched_fragments": 574,
                "total_fragments": 2024,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia solisilvae",
                "strain": "strain=JCM 31607",
                "accession": "GCA_024753215.1",
                "taxid": 1811225,
                "species_taxid": 1811225,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5046,
                "matched_fragments": 585,
                "total_fragments": 2024,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bordetella bronchiseptica",
                "strain": "strain=CCUG 219",
                "accession": "GCA_021391275.1",
                "taxid": 518,
                "species_taxid": 518,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.9443,
                "matched_fragments": 560,
                "total_fragments": 2024,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900094595.1",
                "gtdb_species": "s__Cupriavidus alkaliphilus",
                "ani": 100.0,
                "matched_fragments": 2022,
                "total_fragments": 2024,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Cupriavidus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.96",
                "min_intra_species_ani": "96.04",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 16,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001598055.1",
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                "total_fragments": 2024,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Cupriavidus",
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Cupriavidus",
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                "num_clustered_genomes": 6,
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            },
            {
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            },
            {
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            },
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.237,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "alkaliphilus"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}